View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17185_high_24 (Length: 286)
Name: NF17185_high_24
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 43016495 - 43016577
Alignment:
| Q |
185 |
ttgatgacaattcttaccatgtttcaacaatcatgctccaacaaaatgaaaattttcaggtatgtattattcatcatccattc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016495 |
ttgatgacaattcttaccatgtttcaacaatcatgctccaacaaaatgaaaattttcaggtatgtattattcatcatccattc |
43016577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 43016398 - 43016433
Alignment:
| Q |
88 |
attagtgcaaacgcagctttccatataagtaggcct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016398 |
attagtgcaaacgcagctttccatataagtaggcct |
43016433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University