View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17185_high_25 (Length: 276)

Name: NF17185_high_25
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17185_high_25
NF17185_high_25
[»] chr4 (4 HSPs)
chr4 (11-260)||(19226606-19226855)
chr4 (45-97)||(20251146-20251196)
chr4 (54-97)||(965360-965404)
chr4 (51-94)||(48780181-48780222)
[»] chr8 (1 HSPs)
chr8 (46-97)||(12729141-12729190)
[»] chr3 (6 HSPs)
chr3 (48-94)||(33709572-33709619)
chr3 (46-95)||(23686025-23686072)
chr3 (46-95)||(24058262-24058309)
chr3 (50-97)||(50914726-50914771)
chr3 (45-96)||(8433158-8433209)
chr3 (46-96)||(52653524-52653572)
[»] chr1 (2 HSPs)
chr1 (46-96)||(49053555-49053603)
chr1 (46-96)||(49061135-49061183)
[»] chr7 (3 HSPs)
chr7 (46-96)||(30109836-30109885)
chr7 (46-93)||(1840401-1840448)
chr7 (46-94)||(24870114-24870162)
[»] chr5 (2 HSPs)
chr5 (46-96)||(28274147-28274197)
chr5 (46-94)||(36202866-36202912)
[»] chr2 (1 HSPs)
chr2 (46-94)||(34681420-34681466)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 19226855 - 19226606
Alignment:
Q  11 cataggagatttaaacatttgtgtgctttgtaagatgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaatagtgactatataatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19226855 cataggagatttaaacatttgtgtgctttgtaagatgtgagagaaatttccaaaatatatatttggaaagttgcaatggttaaatagtaactatataatt 19226756  T
Q  111 attatgatattatatgaaattagaaaaatcgtcaagatatgagacgaagtctttccatatctgatgaagtgccccgtaatttggattcttaatcgagcgt 210  Q
    ||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||| ||||||||||   |||||||||||||||    
T  19226755 attatgataatatatgaaattagaaaaatcgctaagatgtgagacgaagtctttccatatctgatgatgtgtcccgtaatttaagttcttaatcgagcgt 19226656  T
Q  211 agtttttagagtgatggaaaatggacctagccttcttatttatgaccata 260  Q
    | |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  19226655 aattttcagagtgatggaaaatggacctaaccttcttatttatgaccata 19226606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 20251146 - 20251196
Alignment:
Q  45 atgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaatag 97  Q
    |||||||||||||||| |||||||  ||||||||||||||||| |||||||||    
T  20251146 atgtgagagaaatttttaaaatat--atttggaaagttgcaattgttaaatag 20251196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 965360 - 965404
Alignment:
Q  54 aaattttc-aaaatatatatttggaaagttgcaatggttaaatag 97  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||    
T  965360 aaattttctaaaatataaatttgaaaagttgcaatggttaaatag 965404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 48780222 - 48780181
Alignment:
Q  51 gagaaattttcaaaatatatatttggaaagttgcaatggttaaa 94  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  48780222 gagaaattttcaaaatatat--ttggaaagttgcaatgattaaa 48780181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 12729141 - 12729190
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaatag 97  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  12729141 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaatag 12729190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 33709572 - 33709619
Alignment:
Q  48 tgagagaaattttcaaaata-tatatttggaaagttgcaatggttaaa 94  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  33709572 tgagagaaatttccaaaataatatatttggaaagttgcaatggttaaa 33709619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 23686025 - 23686072
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaat 95  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  23686025 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaat 23686072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 24058262 - 24058309
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaat 95  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  24058262 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaat 24058309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 50914771 - 50914726
Alignment:
Q  50 agagaaattttcaaaatatatatttggaaagttgcaatggttaaatag 97  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||    
T  50914771 agagaaattttcaaaatatat--ttgaaaagttgcaatggttaaatag 50914726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 8433209 - 8433158
Alignment:
Q  45 atgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 96  Q
    ||||||||| ||||| ||||||||| | ||| ||||||||||||||||||||    
T  8433209 atgtgagaggaatttccaaaatataaacttgaaaagttgcaatggttaaata 8433158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 52653524 - 52653572
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 96  Q
    |||||||||||||| ||||||||  |||||||||||||||||| |||||||    
T  52653524 tgtgagagaaatttccaaaatat--atttggaaagttgcaatgattaaata 52653572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 49053555 - 49053603
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 96  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  49053555 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaata 49053603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 49061135 - 49061183
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 96  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  49061135 tgtgagagaaatttccaaaatat--atttggaaagttgcaatggttaaata 49061183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 30109885 - 30109836
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 96  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  30109885 tgtgagagaa-tttccaaaatatatatttagaaagttgcaatggttaaata 30109836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 1840401 - 1840448
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaa 93  Q
    |||||||| |||||| |||||||| ||||| |||||||||||||||||    
T  1840401 tgtgagagtaatttttaaaatataaatttgaaaagttgcaatggttaa 1840448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 24870114 - 24870162
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaa 94  Q
    |||||||| ||  ||||||||||| ||||||||||||| ||||||||||    
T  24870114 tgtgagagtaagattcaaaatataaatttggaaagttgtaatggttaaa 24870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 28274197 - 28274147
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaata 96  Q
    ||||||||||| || ||||||||| ||||||||||||||||||||| ||||    
T  28274197 tgtgagagaaacttccaaaatataaatttggaaagttgcaatggttgaata 28274147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 36202866 - 36202912
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaa 94  Q
    ||||||||||||||| |||||||||  ||| ||||||||||||||||||    
T  36202866 tgtgagagaaatttttaaaatatat--ttgaaaagttgcaatggttaaa 36202912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 34681466 - 34681420
Alignment:
Q  46 tgtgagagaaattttcaaaatatatatttggaaagttgcaatggttaaa 94  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||||    
T  34681466 tgtgagagaaattttcaaaat--atatttggaatgttgcaatggttaaa 34681420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University