View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_high_29 (Length: 254)
Name: NF17185_high_29
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 46818630 - 46818821
Alignment:
| Q |
44 |
cttgtacaccataatattataatctaatctatgtagttcaaccttctaggatccttaacctcaattctccaatgtccatcagagaaaatagcatttcttg |
143 |
Q |
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| T |
46818630 |
cttgtacaccatgttattataatctaatctatgtagttcaaccttctaggatccttaacctcaattctccaatgtccatcagagaaaatagcatttcttg |
46818729 |
T |
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| Q |
144 |
ctatttttctattcttgacaattctttcatttgattgctttgtaagggaacaatatgattgcaaatgttttggcatagtatcataaactttc |
235 |
Q |
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| T |
46818730 |
ctatttttctattcttgacaattctttcatttgattgctttgtaagggaacaatatgattgcaaatgttttggcatagtatcataaactttc |
46818821 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 36882960 - 36882892
Alignment:
| Q |
86 |
cttctaggatccttaacctcaattctccaatgtccatcagagaaaatagcatttcttgctatttttcta |
154 |
Q |
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| T |
36882960 |
cttctaggatccttaaccttaatcttccaatgcccatcactcaaattagcatttcttgctctttttcta |
36882892 |
T |
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