View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_high_31 (Length: 249)
Name: NF17185_high_31
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8554623 - 8554384
Alignment:
| Q |
1 |
aaaataacaaatgaatacacatcaagacaaacctatagtgaatttctggaaccgtaacatgtccataacaccaacatgagccaatgcacaaccaaaaaga |
100 |
Q |
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| T |
8554623 |
aaaataacagatgaatacacatcaagacaaacctata-tgaatttgtggaactgtaacatgtccataacaccaacatgagccaatgcacaaccaaaaaga |
8554525 |
T |
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| Q |
101 |
tcaggtctcttttcaaaatggggcacaatcgtaaatagagctagctcaatgcagggagaacaatacaaatgcaacttccaattgaatagaaaatgaatca |
200 |
Q |
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| T |
8554524 |
tcaggtctctgttcaaaatggggcacaatcgtaaatagagctagctcaatgcagggagaacaatacaaatgcaacttccaattgaatagaaaatgaatca |
8554425 |
T |
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| Q |
201 |
acctgatttatgcaagcaccaactagaagtccacctttgct |
241 |
Q |
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| T |
8554424 |
acctgatttatgcaagcaccgactagaagtccaccattgct |
8554384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 8559074 - 8558859
Alignment:
| Q |
27 |
acaaacctatagtgaatttctggaaccgtaacatgtccataacaccaacatgagccaatgcacaaccaaaaagatcaggtctcttttcaaaatggggcac |
126 |
Q |
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| T |
8559074 |
acaaacctatagtgaatttatggaaccgtaacatgtccataacaccaacatgagccagtgcacaaccaaaaagatcaggtctctgttcaaaatggggtac |
8558975 |
T |
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| Q |
127 |
aatcgtaaatagagctagctcaatgcagggagaacaatacaaatgcaacttccaattgaatagaaaatgaatc-aacctgatttatgcaagcaccaacta |
225 |
Q |
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| T |
8558974 |
gatagtaaatacagatagctcaatgcagggagcacaatacaaatgcaacttccaattgaatagaaaatgaaacaaacctgatttatgcaagcaccaacaa |
8558875 |
T |
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| Q |
226 |
gaagtccacctttgct |
241 |
Q |
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| T |
8558874 |
gaagtccaccattgct |
8558859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 8555647 - 8555597
Alignment:
| Q |
79 |
agccaatgcacaaccaaaaagatcaggtctcttttcaaaatggggcacaat |
129 |
Q |
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| T |
8555647 |
agccagtgcacaaccaaaaagatcaggtctctgttcaaaatgaggtacaat |
8555597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 8555593 - 8555556
Alignment:
| Q |
160 |
acaatacaaatgcaacttccaattgaatagaaaatgaa |
197 |
Q |
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| T |
8555593 |
acaatacaaatgcaacttcaaattgaatagaaaatgaa |
8555556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 53739002 - 53738919
Alignment:
| Q |
27 |
acaaacctatagtgaatttctggaaccgtaacatgtccataacaccaacatgagccaatgcacaaccaaaaagatcaggtctct |
110 |
Q |
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| T |
53739002 |
acaaacctatggtaaatttgtggaaccgtagcatgtccataacgccaacatgagccaatgcacagccaaagagctcaggtctct |
53738919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 53738823 - 53738783
Alignment:
| Q |
201 |
acctgatttatgcaagcaccaactagaagtccacctttgct |
241 |
Q |
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| T |
53738823 |
acctgatttacgcaagcaccaacaagaagtccaccattgct |
53738783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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