View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_high_33 (Length: 241)
Name: NF17185_high_33
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 6993584 - 6993712
Alignment:
| Q |
1 |
ctaaacatgcaaggatcaagacggttaagagttgttgaaaataaatattcaactaagagagctcttatacacatcaaattcacaaactgatggtaaatga |
100 |
Q |
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| T |
6993584 |
ctaaacatgcaaggatcaagacggttaagagttgttgaaaataaatattcaactaagagaactgttatacacatcaaattcacgaaccgatggtgaatga |
6993683 |
T |
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| Q |
101 |
acaataaatcaggtcaattatatcgtaaa |
129 |
Q |
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| T |
6993684 |
aaaataaatcaggtcaattatatcgtaaa |
6993712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 6993764 - 6993857
Alignment:
| Q |
138 |
aataaaccttatcattaaatcaaatgagatatgatatgacatattaatcgataatgaaagaggcacttgtgcagtgcatgatacagatcatttt |
231 |
Q |
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| T |
6993764 |
aataaaccttaccattaaatcaaatgagatatgatatgacatattaatcgataatgaaagaggtacttgtgcagtgcatattacagatcatttt |
6993857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 7354228 - 7354187
Alignment:
| Q |
131 |
ttggatcaataaaccttatcattaaatcaaatgagatatgat |
172 |
Q |
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| T |
7354228 |
ttggatcaataaatcttaccattaaatcaaatgagatatgat |
7354187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 31977492 - 31977456
Alignment:
| Q |
131 |
ttggatcaataaaccttatcattaaatcaaatgagat |
167 |
Q |
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| T |
31977492 |
ttggatcaataaatctcatcattaaatcaaatgagat |
31977456 |
T |
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