View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17185_high_6 (Length: 483)
Name: NF17185_high_6
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 35577594 - 35577360
Alignment:
| Q |
14 |
atattatctttgattataggtacttactattgtcttccttcaacaccgggttaacaaacccttacacattcatttgttatcataagttaatccttaatta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| || |
|
|
| T |
35577594 |
atattatctttgattataggtacttactattgtcttccttcaacaccgggttaaaaaacccttacacattcatttgttatcataagtcaatccctaacta |
35577495 |
T |
|
| Q |
114 |
gggactatcatatgacatgtgttagacatattcacaaataagagtgtttgcggtgtagtttgattagattttggacgaaaagtcattcgaaccgcaaagt |
213 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35577494 |
aggactatcatatgacatgggttaaacatattcataaataagagtgttcgcggtgtagtttgattagattttggacgaaaagtcattcgaaccgcaaaat |
35577395 |
T |
|
| Q |
214 |
aaaaaatatgatgttagttaggttatgttgacttt |
248 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35577394 |
aaaaaatatgatgttagtttggttatgttgacttt |
35577360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 325 - 465
Target Start/End: Complemental strand, 35577283 - 35577143
Alignment:
| Q |
325 |
caacaatgtttccaatctcatttcataaaacaatgttaagagcaatatggaacgaattaataacaaatttgaaaatgaaaaacaatttatttccaattta |
424 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
35577283 |
caacaatgtttccactctcatttcataaaacaatgttaagagcaatatggaacgaattaataacaaatttaaaagtgaaaaacaatttattttcaattta |
35577184 |
T |
|
| Q |
425 |
cctaatattagaatctcattttcatccaataatgttttcaa |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35577183 |
cctaatattagaatctcattttcatccaataatgttttcaa |
35577143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University