View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_high_9 (Length: 406)
Name: NF17185_high_9
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 30341968 - 30342354
Alignment:
| Q |
1 |
atctgagtaaaaagaaaaagtaattaatgaaatttcgttttcagcatagatactctaaataacatttcttcactactacactaccatcactatcatttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30341968 |
atctgagtaaaaagaaaaagtaattaatgaaatttcgttttcagcatacatactctaaataacatttcttcactactacactaccatcactatcatttcc |
30342067 |
T |
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| Q |
101 |
atttacatttgttgaattcaaaaacccttttcctagtaagagtaaacagataggagtatttcttttctggtnnnnnnnngacaaaacatatcttcaccct |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30342068 |
atttacatttgttgaattcaaaa-cccttttcctagtaagagtaaacagataggagtatttcttttctggtaaaaaaaagacaaaacatatcttcaccct |
30342166 |
T |
|
| Q |
201 |
tcccaactcaaaatcccatgaaaacaaacaacataaccaaaaccagcttaataggatcaaaaagcatcaaagaagccccattgaaaaggacctcactatc |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30342167 |
tcccaattcaaaatcccatgaaaacaaacaacataaccaaaaccagcttaataggatcaaaaagcatcaaagaagccccattgaaaaggacttcactatc |
30342266 |
T |
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| Q |
301 |
agaaacaacatctgttattttgcagggattaagttgacccaaactacctccattttcagaacagctactattattgtttcccaaacac |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30342267 |
agaaacaacatctgttattttgcagggattaagttgacccaaactacctccattttcagaacagctactattattgtttcccaaacac |
30342354 |
T |
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