View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_10 (Length: 375)
Name: NF17185_low_10
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 23 - 367
Target Start/End: Original strand, 29105937 - 29106282
Alignment:
| Q |
23 |
agtgatgttcaatttgtttcctcaaagttattgtatttgatattcatttcaaattaatatgaaagttgtgcatacaaaatagnnnnnnnnn--cttcaag |
120 |
Q |
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| T |
29105937 |
agtgatgttcaatttgtttcctcaaagttattgtatttgatattcatttcaaattaatatgaaagttgtgcatacaaaatagtttttttttttcttcaag |
29106036 |
T |
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| Q |
121 |
aatgaacctaacatatcgtaagggctacttttatcctacaatttttcccttaaaatttacacctctccgaatttaccaatccaaactaagaaaaacacaa |
220 |
Q |
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| T |
29106037 |
aatgaacctaaaatatcgtaagggctacttttatcctacaattttttccttaaaatttacacctctccgaatttaccaatccaaactaagaaaaacacaa |
29106136 |
T |
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| Q |
221 |
gnnnnnnnnnctttctttcacatcccgataagtaaattcgtatacaaggtttctaaaaaccaatggaggagaaagnnnnnnntaatctctttgttgacaa |
320 |
Q |
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| T |
29106137 |
gttttttttttttcctttcacatcccgataagtaaattcgtatacaaggtttctaaaaaccaatggaggagaaaggaaaaaa-aaactcattgttgacaa |
29106235 |
T |
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| Q |
321 |
gaaaagtagatgataaaagagaattttaatcgtcccctccctatgct |
367 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
29106236 |
gaaaagtacataataaaagagaattttaatcgtcccctccctatgct |
29106282 |
T |
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