View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_12 (Length: 371)
Name: NF17185_low_12
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 3 - 357
Target Start/End: Complemental strand, 15972326 - 15971972
Alignment:
| Q |
3 |
caccacattgtcattgaaatccataagaacagtggttggaggaggaatactccttcatgtggtatatatgattgacaataatggaagtattaattacagc |
102 |
Q |
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| T |
15972326 |
caccacattgtcattgaaatccataagaacagtggttggagaaggaatactccttcatgtggtatatatgattgacaataatggaagtattaattacagt |
15972227 |
T |
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| Q |
103 |
gcagcaaacttcaatttaggaagtattgtacatttctaacctccaatccatgttcttaaacgcaagtctggactttggacccatataggtccttctattt |
202 |
Q |
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| T |
15972226 |
gcagcaaacttcaatttaggaagtattgtacatttctaacctccaatccatgttcttaaacgcaagtcaggactttggacccatataggtcctcctattt |
15972127 |
T |
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| Q |
203 |
aagggtgaaaatcaatctcatattgccttatatatgtctcttaaactttgcttgcnnnnnnnntgctaacaataaaggttaaactacaactttccaacca |
302 |
Q |
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| T |
15972126 |
aagggtgaaaatcaatctcatattgccttatatatgtctcttaaactttgcttgcaaaaaaaatgctaacaaaaaaggttaaactacaactttccaacca |
15972027 |
T |
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| Q |
303 |
tgtttcctttttcaattttatttagcattttgtacaaccatgttttgacattaat |
357 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15972026 |
tgtttccttttttaattttatttagcattgtgtacaaccatgttttgacattaat |
15971972 |
T |
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