View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17185_low_13 (Length: 369)

Name: NF17185_low_13
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17185_low_13
NF17185_low_13
[»] chr1 (12 HSPs)
chr1 (68-351)||(2947002-2947285)
chr1 (67-351)||(3353403-3353690)
chr1 (146-341)||(3380268-3380463)
chr1 (258-332)||(3364051-3364125)
chr1 (276-348)||(2007912-2007984)
chr1 (187-347)||(3342702-3342862)
chr1 (260-347)||(4333563-4333650)
chr1 (276-330)||(3217179-3217233)
chr1 (289-330)||(1794136-1794177)
chr1 (276-348)||(2021049-2021121)
chr1 (267-347)||(3374136-3374216)
chr1 (267-347)||(3366430-3366510)
[»] chr2 (4 HSPs)
chr2 (183-341)||(20924555-20924713)
chr2 (260-340)||(39275308-39275388)
chr2 (260-339)||(20936167-20936246)
chr2 (276-326)||(20954421-20954471)
[»] chr4 (1 HSPs)
chr4 (261-331)||(21238955-21239025)
[»] chr5 (1 HSPs)
chr5 (289-341)||(17971152-17971204)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 68 - 351
Target Start/End: Original strand, 2947002 - 2947285
Alignment:
Q  68 cacaatgtcaatcggtcataatttgctacattattgaaaagtttagtcataaccacctaaaaagacaatgatacttttaggagaatagaaaacattgaga 167  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2947002 cacaatgtcaatcggtcataatttgccacattattgaaaagtttagtcataaccacctaaaaagacaatgatacttttaggagaatagaaaacattggga 2947101  T
Q  168 agagtcttttccacagtaaataacttcagcttgtctcgacactttcttgagctgtaatagttctgtcatcacctcaggtctgatctctacatcaggctcc 267  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2947102 agagtcttttccacagtaaataacttcagcttgtctcgacattttcttgagctgtaatagttctgtcatcacctcagatctgatctctacatcaggctcc 2947201  T
Q  268 acaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcctatg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2947202 acaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcctatg 2947285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 67 - 351
Target Start/End: Complemental strand, 3353690 - 3353403
Alignment:
Q  67 tcacaatgtcaatcggtcataatttgctacattattgaaaagtttagtcataaccacctaaaaagaca--atgatacttttaggagaatagaaaacattg 164  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |||| ||||| ||  |||| ||||||||||||||||||||||||     
T  3353690 tcacaatgtcaatcggtcataatttgccacatcattgaaaagtttactcataacaaccttaaaagccataatgaaacttttaggagaatagaaaacatta 3353591  T
Q  165 agaagagtcttttccacagtaaataacttcagcttgtctc-gacactttcttgagctgtaatagttctgtcatcacctcaggtctgatctctacatcagg 263  Q
     |||||||||||||||| ||||||||||||||| |||||| |||||| |||| | |||   || |||||||||||||||||||||||||| ||||| |||    
T  3353590 ggaagagtcttttccacggtaaataacttcagcctgtctctgacactctcttcaactggtttacttctgtcatcacctcaggtctgatctttacataagg 3353491  T
Q  264 ctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcctatg 351  Q
    ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3353490 ctccaaaatcacatattctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcctatg 3353403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 341
Target Start/End: Complemental strand, 3380463 - 3380268
Alignment:
Q  146 aggagaatagaaaacattgagaagagtcttttccacagtaaataacttcagcttgtctcgacactttcttgagctgtaatagttctgtcatcacctcagg 245  Q
    ||||||||| |||||||   ||||||||||||  |  ||||||||||||||||| || |||| || ||||||   | | |||||||||||||| ||  ||    
T  3380463 aggagaataaaaaacatcatgaagagtcttttttaaggtaaataacttcagcttctcccgacgctctcttgaagcgaattagttctgtcatcaactttgg 3380364  T
Q  246 tctgatctctacatcaggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 341  Q
       ||  |||||| || ||| |||||||| |||||||||||| |||||||  ||||| ||||| |  |||||||||||||| ||||||||||||||    
T  3380363 ctggacgtctacaacatgcttcacaatcatcttttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccaga 3380268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 3364125 - 3364051
Alignment:
Q  258 atcaggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagattt 332  Q
    ||||||||||||||||| ||||||||| |  ||||||| || ||| |||||||||||||||||||||||||||||    
T  3364125 atcaggctccacaatcatcttttctagtacaggagaatataaaagcagaaatctgataaaatctaattcagattt 3364051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 2007984 - 2007912
Alignment:
Q  276 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcct 348  Q
    |||||||||||  || ||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  2007984 cttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgcct 2007912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 347
Target Start/End: Complemental strand, 3342862 - 3342702
Alignment:
Q  187 ataacttcagcttgtctcgacactttcttgagctgtaatagttctgtcatcacctcaggtctgatctctacatcaggctccacaatcaccttttctagca 286  Q
    ||||||||||||||||| ||  || |||||| | | | ||||| |||||| ||||||| |||||  | | ||  ||||| ||| | || |||||||||      
T  3342862 ataacttcagcttgtcttgatgctctcttgaaccgaattagttttgtcattacctcagttctgacgtttgcaataggcttcacgaacatcttttctagat 3342763  T
Q  287 ttggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcc 347  Q
      ||||||| |||||| ||||||  |||||||||||||||||||||| ||||||| |||||    
T  3342762 caggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgcc 3342702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 347
Target Start/End: Original strand, 4333563 - 4333650
Alignment:
Q  260 caggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcc 347  Q
    |||||| |||||||| |||||||||||   |||||| |||||| ||||||||||| |||| ||||||||| | | ||||||| |||||    
T  4333563 caggcttcacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcagactgggtaccagagatgcc 4333650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 3217179 - 3217233
Alignment:
Q  276 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagat 330  Q
    |||||||||||| |||||||  | ||| |||||||||||||||||||||||||||    
T  3217179 cttttctagcatgggagaatacataagtagaaatctgataaaatctaattcagat 3217233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 1794177 - 1794136
Alignment:
Q  289 ggagaatgtagaagaagaaatctgataaaatctaattcagat 330  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  1794177 ggagaatatagaagtagaaatctgataaaatctaattcagat 1794136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 2021121 - 2021049
Alignment:
Q  276 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcct 348  Q
    |||||||||||| || ||||  ||||| |||||||| | |||||||||||||| ||| |||||||| ||||||    
T  2021121 cttttctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcagctttcataccagagatgcct 2021049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 3374216 - 3374136
Alignment:
Q  267 cacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcc 347  Q
    |||||||| |||||||||||  ||||||| | |||| ||||| |  |||||||||||||| ||| |||||||||| |||||    
T  3374216 cacaatcatcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccagagatgcc 3374136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 3366510 - 3366430
Alignment:
Q  267 cacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatgcc 347  Q
    |||||||| ||| |||||||| |||||||   |||| ||||| |  |||||||||| ||| |||||||||||||| |||||    
T  3366510 cacaatcatcttgtctagcataggagaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgcc 3366430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 341
Target Start/End: Complemental strand, 20924713 - 20924555
Alignment:
Q  183 gtaaataacttcagcttgtctcgacactttcttgagctgtaatagttctgtcatcacctcaggtctgatctctacatcaggctccacaatcaccttttct 282  Q
    |||||||||||||||||||   ||| || || ||| | | | ||||||||| |||| ||| ||| |||  | | || ||||||||||||||| |||||      
T  20924713 gtaaataacttcagcttgttcggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttttg 20924614  T
Q  283 agcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 341  Q
    ||||  || ||||  ||||| |||||||||||||||||||||||||||||| |||||||    
T  20924613 agcacaggtgaatagagaagtagaaatctgataaaatctaattcagatttggtaccaga 20924555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 39275388 - 39275308
Alignment:
Q  260 caggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccag 340  Q
    |||||| ||||||||  ||||||||||| |||||||  |  ||||||||| ||||||||||||||||||||||||| ||||    
T  39275388 caggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccag 39275308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 20936246 - 20936167
Alignment:
Q  260 caggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgatacca 339  Q
    |||||| |||| ||| |||||||||||  ||||||| |||||| |||||| ||||||||||||||||  ||||| |||||    
T  20936246 caggcttcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattccaatttgttacca 20936167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 20954471 - 20954421
Alignment:
Q  276 cttttctagcattggagaatgtagaagaagaaatctgataaaatctaattc 326  Q
    |||||||||||| ||||||| |||||| |||||| ||||||||||||||||    
T  20954471 cttttctagcatgggagaatatagaagtagaaatttgataaaatctaattc 20954421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 21239025 - 21238955
Alignment:
Q  261 aggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatt 331  Q
    ||||| |||| ||| |||||||| ||| |||||||  ||||| |||||||||||||||||||| |||||||    
T  21239025 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagatt 21238955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 17971204 - 17971152
Alignment:
Q  289 ggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccaga 341  Q
    ||||||| | |||| |||||||| || |||||||||||||||||| |||||||    
T  17971204 ggagaatattgaagtagaaatctaatgaaatctaattcagatttggtaccaga 17971152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University