View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17185_low_14 (Length: 359)

Name: NF17185_low_14
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17185_low_14
NF17185_low_14
[»] scaffold0440 (1 HSPs)
scaffold0440 (1-343)||(839-1181)
[»] chr6 (6 HSPs)
chr6 (60-110)||(21249511-21249561)
chr6 (168-245)||(21136547-21136623)
chr6 (154-266)||(21138664-21138775)
chr6 (169-222)||(21150056-21150109)
chr6 (43-104)||(21184041-21184102)
chr6 (43-107)||(21221016-21221080)
[»] scaffold0076 (1 HSPs)
scaffold0076 (168-226)||(12602-12660)
[»] scaffold0272 (1 HSPs)
scaffold0272 (168-216)||(5401-5449)


Alignment Details
Target: scaffold0440 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 839 - 1181
Alignment:
Q  1 ttaattatgaaatcaatttttgctccattaaatattctcaaagcaccaaaacatattactaatgaactgtttaatcaatcaaatggacttcacaatgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  839 ttaattatgaaatcaatttttgctccattaaatattctcaaagcaccaaaacatattactaatgaactgtttaatcaatcaaatggacttcacaatgtga 938  T
Q  101 attattggatttgattggttcctaacagttacagttacttgacttggatgacttgtatgcaagggcattttataggtaaatcttcctcatggttgttgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939 attattggatttgattggttcctaacagttacagttacttgacttggatgacttgtatgcaagggcattttataggtaaatcttcctcatggttgttgag 1038  T
Q  201 gcaccatcgatgtgggactgttcaaaaccaatatccagagtgctagtttcgttgctactaactacaagggattacttctacctcctgcccatgtttgggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039 gcaccatcgatgtgggactgttcaaaaccaatatccagagtgctagtttcgttgctactaactacaagggattacttctacctcctgcccatgtttgggt 1138  T
Q  301 gttgagaatttatattcaatggaagaggagaatagtgtgttgg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1139 gttgagaatttatattcaatggaagaggagaatagtgtgttgg 1181  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 21249561 - 21249511
Alignment:
Q  60 taatgaactgtttaatcaatcaaatggacttcacaatgtgaattattggat 110  Q
    |||||||| ||||||||||| || |||||| ||||||||||||||||||||    
T  21249561 taatgaaccgtttaatcaattaagtggactgcacaatgtgaattattggat 21249511  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 21136547 - 21136623
Alignment:
Q  168 ttttataggtaaatcttcctcatggttgttgaggcaccatcgatgtgggactgttcaaaaccaatatccagagtgcta 245  Q
    ||||||| ||||||| ||||| |||||||| | |||||| ||||||||||||||| ||||||||  || |||||||||    
T  21136547 ttttataagtaaatcctcctcttggttgtttaagcaccaccgatgtgggactgtt-aaaaccaaattctagagtgcta 21136623  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 21138664 - 21138775
Alignment:
Q  154 tgtatgcaagggcattttataggtaaatcttcctcatggttgttgaggcaccatcgatgtgggactgttcaaaaccaatatccagagtgctagtttcgtt 253  Q
    ||||| ||||||  ||||||||||||| ||||||| |||||||| |   |||||| |||||||||| ||  |||| || ||||| |||||||| ||  ||    
T  21138664 tgtatacaagggtgttttataggtaaaccttcctcttggttgttcaacgaccatcaatgtgggact-tttgaaactaaaatccatagtgctagcttgttt 21138762  T
Q  254 gctactaactaca 266  Q
    |||||||||||||    
T  21138763 gctactaactaca 21138775  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 21150056 - 21150109
Alignment:
Q  169 tttataggtaaatcttcctcatggttgttgaggcaccatcgatgtgggactgtt 222  Q
    ||||||||||||| |||||| | |||||| | ||| ||||||||||||||||||    
T  21150056 tttataggtaaattttcctctttgttgttaaagcatcatcgatgtgggactgtt 21150109  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 21184041 - 21184102
Alignment:
Q  43 gcaccaaaacatattactaatgaactgtttaatcaatcaaatggacttcacaatgtgaatta 104  Q
    ||||||||| |||||| ||||||||  ||||| |||| || ||||| |||||||||||||||    
T  21184041 gcaccaaaaaatattattaatgaaccatttaaccaataaattggacatcacaatgtgaatta 21184102  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 21221016 - 21221080
Alignment:
Q  43 gcaccaaaacatattactaatgaactgtttaatcaatcaaatggacttcacaatgtgaattattg 107  Q
    |||||||||  ||||||||||||| ||||||||| || || || ||  |||||||||||||||||    
T  21221016 gcaccaaaaattattactaatgaattgtttaatcgatgaagtgaacagcacaatgtgaattattg 21221080  T

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Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 12602 - 12660
Alignment:
Q  168 ttttataggtaaatcttcctcatggttgttgaggcaccatcgatgtgggactgttcaaa 226  Q
    ||||||| ||||||||||||| || ||||| | |||||||| |||||||||| ||||||    
T  12602 ttttataagtaaatcttcctcttgattgtttaagcaccatccatgtgggactattcaaa 12660  T

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Target: scaffold0272 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 5449 - 5401
Alignment:
Q  168 ttttataggtaaatcttcctcatggttgttgaggcaccatcgatgtggg 216  Q
    ||||||| ||||| ||||||| |||||||| | ||||||||||||||||    
T  5449 ttttataagtaaaccttcctcttggttgttcatgcaccatcgatgtggg 5401  T

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