View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_15 (Length: 350)
Name: NF17185_low_15
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 41733232 - 41733371
Alignment:
| Q |
196 |
taatttatgaatattaacttattgagtgttcaaatgtgttaaaaatgaccaagtctctgtttggaaatgtagcttctcttctcataaattgagtaacatt |
295 |
Q |
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| T |
41733232 |
taatttatgaatattaacttattgagtgttcaaatgtgttaaaaatgaccaagtctctgtttggaaatgtag-----cttctcataaattgagtaacatt |
41733326 |
T |
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| Q |
296 |
ggtatgcgtataacatgaaacgaatacaaattcagacggcctatg |
340 |
Q |
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| T |
41733327 |
ggtatgcgtataacatgaaacgaatacaaatttagacggcctatg |
41733371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 41733077 - 41733169
Alignment:
| Q |
98 |
ttcaggtctcaccaatttgagtaatgatgatccatatagcgcacacattatgaggaagacatgtgcaacctcgtgatccataccatatccata |
190 |
Q |
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| T |
41733077 |
ttcaggtctcaccaatttgagtaatgatgatccatatagcgcacacattataaggaagacatgtgcaacctcgtgatccataccatatccata |
41733169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 33440941 - 33441039
Alignment:
| Q |
103 |
gtctcaccaatttgagtaatgatgatccatatagcgcacacattatgaggaagacatgtgcaacctcgtgatccataccatatccataatagataattt |
201 |
Q |
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| T |
33440941 |
gtctcaccaatttgagtgatgatgattcatatagcgcacacattataaggaaatcatgtgcaacctcgtgatccataccatatccataatagataattt |
33441039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 33441180 - 33441239
Alignment:
| Q |
281 |
aaattgagtaacattggtatgcgtataacatgaaacgaatacaaattcagacggcctatg |
340 |
Q |
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| T |
33441180 |
aaattcagtcacattggtatgcgaaaaacatgaaacaaatacaaattcagacggcttatg |
33441239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 33441115 - 33441167
Alignment:
| Q |
196 |
taatttatgaatattaacttatt---gagtgttcaaatgtgttaaaaatgacc |
245 |
Q |
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| T |
33441115 |
taatttatgaacattaacttatttaggagtgttcaaatgtgttaaaaatgacc |
33441167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 33440347 - 33440387
Alignment:
| Q |
17 |
aaaaaatacaatatttgaatatgtccctgtaattcattcgg |
57 |
Q |
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| T |
33440347 |
aaaaaatacaatatttgaatatttccctataattcattcgg |
33440387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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