View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_16 (Length: 327)
Name: NF17185_low_16
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 38532811 - 38533120
Alignment:
| Q |
18 |
actaagagccattcttcactacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatgtcttaaaaacctacgatcga |
117 |
Q |
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| T |
38532811 |
actaagagccattcttcactacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatgtcttaaaaacctacgatcga |
38532910 |
T |
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| Q |
118 |
ccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaaat |
217 |
Q |
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| T |
38532911 |
ccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaaat |
38533010 |
T |
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| Q |
218 |
gggttcaaaccgttcttaaagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccaacaaactcatctcctcctaccg |
317 |
Q |
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| T |
38533011 |
gggttcaaaccgttcttaaagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccagcaaactcatctcctcctaccg |
38533110 |
T |
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| Q |
318 |
caaggaacct |
327 |
Q |
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| T |
38533111 |
caaggaacct |
38533120 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 34715467 - 34715422
Alignment:
| Q |
202 |
gaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgg |
247 |
Q |
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| T |
34715467 |
gaagaagatcctaaatgggttcaaaccgttctcaaagacgcaccgg |
34715422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 10188847 - 10188944
Alignment:
| Q |
118 |
ccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaa |
215 |
Q |
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|||||||||||||| || || ||| |||| || || | |||||||||| ||||||||| ||| |||||| |||| ||| || |||||||||||||| |
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| T |
10188847 |
ccatgcaactttctcgtgtttggaattggtcacgacgcactcatgtgggattcgtttaatccacgtggcatcacactatatctcgaagaagatcctaa |
10188944 |
T |
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