View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17185_low_19 (Length: 311)

Name: NF17185_low_19
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17185_low_19
NF17185_low_19
[»] chr6 (21 HSPs)
chr6 (63-306)||(22702948-22703191)
chr6 (63-293)||(22697772-22698002)
chr6 (63-306)||(21402011-21402254)
chr6 (63-233)||(29490812-29490982)
chr6 (63-210)||(2817401-2817548)
chr6 (63-210)||(34142781-34142928)
chr6 (63-210)||(34155397-34155544)
chr6 (63-210)||(6727777-6727924)
chr6 (63-210)||(34376464-34376611)
chr6 (63-210)||(24190654-24190802)
chr6 (63-210)||(31983475-31983622)
chr6 (221-293)||(31981832-31981904)
chr6 (221-293)||(34376198-34376270)
chr6 (13-59)||(22699738-22699784)
chr6 (221-293)||(24191126-24191198)
chr6 (221-293)||(24192223-24192295)
chr6 (233-293)||(34142358-34142418)
chr6 (233-293)||(34154974-34155034)
chr6 (221-274)||(6728193-6728246)
chr6 (221-293)||(2817901-2817973)
chr6 (250-306)||(29491005-29491061)
[»] chr5 (23 HSPs)
chr5 (63-306)||(17510328-17510571)
chr5 (63-306)||(42019843-42020086)
chr5 (89-306)||(17505223-17505440)
chr5 (63-306)||(42024623-42024866)
chr5 (89-306)||(43579930-43580147)
chr5 (89-301)||(41858861-41859071)
chr5 (89-199)||(41853846-41853956)
chr5 (90-210)||(1413100-1413220)
chr5 (89-210)||(36254517-36254638)
chr5 (63-210)||(24770605-24770752)
chr5 (94-210)||(26709688-26709804)
chr5 (94-210)||(26979422-26979538)
chr5 (120-210)||(24776116-24776206)
chr5 (221-293)||(1413806-1413878)
chr5 (13-59)||(17508630-17508676)
chr5 (13-59)||(41857149-41857195)
chr5 (13-59)||(42023542-42023588)
chr5 (221-293)||(24776563-24776635)
chr5 (13-59)||(24772849-24772895)
chr5 (221-293)||(26709372-26709444)
chr5 (221-293)||(26979106-26979178)
chr5 (221-293)||(36254105-36254177)
chr5 (221-293)||(24771108-24771180)
[»] chr4 (35 HSPs)
chr4 (63-306)||(8984987-8985230)
chr4 (63-306)||(13700780-13701023)
chr4 (63-306)||(21304535-21304778)
chr4 (63-306)||(8979867-8980110)
chr4 (63-306)||(21299415-21299658)
chr4 (63-306)||(54991746-54991989)
chr4 (89-293)||(39999405-39999609)
chr4 (89-293)||(40004363-40004567)
chr4 (89-293)||(54343539-54343743)
chr4 (89-293)||(54348693-54348897)
chr4 (63-306)||(54990392-54990635)
chr4 (89-293)||(36359664-36359868)
chr4 (89-293)||(36354478-36354682)
chr4 (89-210)||(53798329-53798450)
chr4 (63-210)||(41393858-41394005)
chr4 (89-210)||(51018732-51018853)
chr4 (63-210)||(9763273-9763420)
chr4 (63-210)||(13695757-13695904)
chr4 (63-210)||(13711370-13711517)
chr4 (63-210)||(4207042-4207188)
chr4 (90-210)||(47045647-47045767)
chr4 (221-293)||(13695431-13695503)
chr4 (221-293)||(9763771-9763843)
chr4 (221-293)||(41393512-41393584)
chr4 (221-293)||(53797898-53797970)
chr4 (13-59)||(13699067-13699113)
chr4 (13-59)||(21301325-21301371)
chr4 (13-59)||(36357870-36357916)
chr4 (13-59)||(40002798-40002844)
chr4 (211-293)||(51019117-51019199)
chr4 (13-59)||(54346932-54346978)
chr4 (221-293)||(13710938-13711010)
chr4 (221-293)||(47046060-47046132)
chr4 (13-59)||(8981777-8981823)
chr4 (13-59)||(13702945-13702991)
[»] chr1 (18 HSPs)
chr1 (63-306)||(27711593-27711836)
chr1 (89-306)||(37404026-37404243)
chr1 (89-306)||(37409145-37409362)
chr1 (89-292)||(34317840-34318043)
chr1 (89-306)||(27716713-27716930)
chr1 (89-293)||(36684270-36684474)
chr1 (89-306)||(11250731-11250948)
chr1 (63-210)||(5725365-5725512)
chr1 (63-210)||(3585301-3585448)
chr1 (64-210)||(5730771-5730917)
chr1 (89-210)||(48245998-48246119)
chr1 (89-148)||(50959010-50959069)
chr1 (13-59)||(27715000-27715046)
chr1 (221-293)||(5730374-5730446)
chr1 (221-293)||(3584870-3584942)
chr1 (13-59)||(37405908-37405954)
chr1 (211-293)||(48246427-48246509)
chr1 (13-59)||(5728674-5728721)
[»] scaffold0517 (2 HSPs)
scaffold0517 (89-306)||(3833-4050)
scaffold0517 (13-59)||(2120-2166)
[»] chr7 (31 HSPs)
chr7 (63-293)||(33238338-33238568)
chr7 (63-293)||(33243515-33243745)
chr7 (89-293)||(47994136-47994340)
chr7 (89-293)||(47999311-47999515)
chr7 (63-210)||(21080321-21080468)
chr7 (89-210)||(2233978-2234099)
chr7 (63-210)||(32211965-32212112)
chr7 (63-210)||(42572600-42572747)
chr7 (89-210)||(17496100-17496221)
chr7 (89-210)||(17556993-17557114)
chr7 (63-210)||(12935084-12935231)
chr7 (63-210)||(19308876-19309023)
chr7 (63-210)||(47176496-47176643)
chr7 (89-203)||(16538699-16538813)
chr7 (89-203)||(16626849-16626963)
chr7 (63-210)||(43893542-43893689)
chr7 (63-142)||(47544749-47544828)
chr7 (221-293)||(2234384-2234456)
chr7 (221-293)||(12934666-12934738)
chr7 (13-59)||(33241732-33241778)
chr7 (13-59)||(47997529-47997575)
chr7 (221-293)||(19309365-19309437)
chr7 (221-293)||(21080793-21080865)
chr7 (221-293)||(42572214-42572286)
chr7 (221-293)||(43893138-43893210)
chr7 (221-293)||(16539166-16539238)
chr7 (221-293)||(16626424-16626496)
chr7 (221-293)||(17495672-17495744)
chr7 (221-293)||(17557470-17557542)
chr7 (221-293)||(47176904-47176976)
chr7 (233-293)||(32212419-32212479)
[»] chr3 (29 HSPs)
chr3 (89-306)||(55129060-55129276)
chr3 (96-306)||(17368989-17369199)
chr3 (63-293)||(20090191-20090421)
chr3 (63-293)||(20095316-20095546)
chr3 (89-293)||(15762585-15762789)
chr3 (89-293)||(15767746-15767950)
chr3 (63-210)||(3481649-3481796)
chr3 (89-210)||(34128437-34128558)
chr3 (89-210)||(17358566-17358686)
chr3 (89-210)||(30338126-30338247)
chr3 (63-210)||(30341204-30341351)
chr3 (89-210)||(54271312-54271433)
chr3 (120-210)||(3476249-3476339)
chr3 (120-210)||(4117007-4117097)
chr3 (221-293)||(3482166-3482238)
chr3 (221-293)||(17358107-17358179)
chr3 (221-293)||(54270914-54270986)
chr3 (13-59)||(3478439-3478485)
chr3 (13-59)||(15764511-15764557)
chr3 (13-59)||(17362634-17362680)
chr3 (13-59)||(17367276-17367322)
chr3 (13-59)||(20092142-20092188)
chr3 (221-293)||(4117345-4117417)
chr3 (221-293)||(30338506-30338578)
chr3 (221-293)||(34128923-34128995)
chr3 (221-293)||(3476699-3476771)
chr3 (221-293)||(10321712-10321784)
chr3 (221-272)||(30341720-30341771)
chr3 (246-291)||(10321816-10321861)
[»] scaffold0014 (3 HSPs)
scaffold0014 (89-293)||(31881-32085)
scaffold0014 (89-293)||(26709-26913)
scaffold0014 (13-59)||(30102-30148)
[»] chr2 (14 HSPs)
chr2 (63-306)||(40392589-40392832)
chr2 (89-293)||(42728175-42728379)
chr2 (90-293)||(42723007-42723210)
chr2 (89-293)||(44096638-44096842)
chr2 (89-280)||(44754161-44754352)
chr2 (89-280)||(44759327-44759518)
chr2 (89-306)||(40518075-40518297)
chr2 (92-280)||(40519929-40520122)
chr2 (63-210)||(4162895-4163042)
chr2 (63-210)||(28751021-28751168)
chr2 (13-59)||(42724940-42724986)
chr2 (13-59)||(44756092-44756138)
chr2 (221-293)||(4163331-4163403)
chr2 (221-293)||(28751483-28751555)
[»] scaffold0055 (1 HSPs)
scaffold0055 (89-293)||(3360-3564)
[»] scaffold0052 (1 HSPs)
scaffold0052 (89-293)||(80971-81175)
[»] chr8 (22 HSPs)
chr8 (89-293)||(32010862-32011066)
chr8 (89-293)||(32016036-32016240)
chr8 (63-306)||(2165394-2165638)
chr8 (63-210)||(43998546-43998693)
chr8 (63-210)||(17955134-17955281)
chr8 (89-210)||(24885324-24885445)
chr8 (63-210)||(42513848-42513995)
chr8 (120-210)||(21641184-21641273)
chr8 (211-293)||(24884982-24885064)
chr8 (13-59)||(21645574-21645620)
chr8 (13-59)||(32014255-32014301)
chr8 (221-293)||(21643835-21643907)
chr8 (221-293)||(21643020-21643092)
chr8 (221-293)||(21643395-21643467)
chr8 (229-292)||(42514182-42514245)
chr8 (221-293)||(21641520-21641592)
chr8 (221-293)||(21641895-21641967)
chr8 (221-293)||(21642270-21642342)
chr8 (221-293)||(21642645-21642717)
chr8 (221-293)||(43998984-43999056)
chr8 (17-57)||(19434003-19434043)
chr8 (17-57)||(19570152-19570192)
[»] scaffold0594 (2 HSPs)
scaffold0594 (63-210)||(8534-8681)
scaffold0594 (221-293)||(8962-9034)
[»] scaffold0166 (5 HSPs)
scaffold0166 (63-210)||(12986-13133)
scaffold0166 (120-210)||(18500-18590)
scaffold0166 (13-59)||(15233-15279)
scaffold0166 (221-293)||(13493-13565)
scaffold0166 (221-293)||(18946-19018)
[»] scaffold0060 (2 HSPs)
scaffold0060 (152-210)||(37654-37712)
scaffold0060 (211-293)||(37279-37361)
[»] scaffold0165 (1 HSPs)
scaffold0165 (13-59)||(15542-15588)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 22702948 - 22703191
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22702948 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 22703047  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703048 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 22703147  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  22703148 tgagaatcgaatactcttctctggttttctctcctctcttctcc 22703191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 63 - 293
Target Start/End: Original strand, 22697772 - 22698002
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697772 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 22697871  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697872 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 22697971  T
Q  263 tgagaatcgaatactcttatctggttttctc 293  Q
    |||||||||||||||||| ||||||||||||    
T  22697972 tgagaatcgaatactcttctctggttttctc 22698002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 21402254 - 21402011
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21402254 ggaacactagtgtataatgaaaaaaacttggagtatagtagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 21402155  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  21402154 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagcttgggaatagtattcatcactcaaaaac 21402055  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    | |||||||||||||||| | |||||||||||||||||| ||||    
T  21402054 taagaatcgaatactcttctttggttttctctcctctcttctcc 21402011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 63 - 233
Target Start/End: Original strand, 29490812 - 29490982
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29490812 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcttttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 29490911  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagag 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490912 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagag 29490982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 2817401 - 2817548
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817401 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 2817500  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  2817501 aattgaaaatttaatgtcccacattgggtagatcacacactctagtag 2817548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 34142928 - 34142781
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  34142928 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtg 34142829  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  34142828 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 34142781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 34155544 - 34155397
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  34155544 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtg 34155445  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  34155444 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 34155397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 6727777 - 6727924
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||    
T  6727777 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtg 6727876  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  6727877 aattgaaaattttatgttccacattgggtagatcacacactctagtag 6727924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 34376611 - 34376464
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||    
T  34376611 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtg 34376512  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  34376511 aattgaaaattttatgtcccacattgggtagataacacactctagtag 34376464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 24190654 - 24190802
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||    
T  24190654 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtg 24190753  T
Q  163 aattgaaaa-ttttatgtcccacatcgggtagatcacacactctagtag 210  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24190754 aattgaaaatttttatgtcccacattgggtagatcacacactctagtag 24190802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 31983622 - 31983475
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||| ||||||||||||||    
T  31983622 ggaacactagtgtatattggcaaaaacttggagtatactagtttttatgaggagacattggaatgtaaacacaatgatgtagaaattagtgtaaagtgtg 31983523  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  31983522 aattgaaaattttatgtcccgcattgggtagatcacacactctagtag 31983475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 31981904 - 31981832
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  31981904 tataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatactcttctctggttttctc 31981832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 34376270 - 34376198
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  34376270 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34376198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 22699738 - 22699784
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22699738 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 22699784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 24191126 - 24191198
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | |||||||||||||||||  |||||||||| ||||| ||||||||||||    
T  24191126 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 24191198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 24192223 - 24192295
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | |||||||||||||||||  |||||||||| ||||| ||||||||||||    
T  24192223 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 24192295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 34142418 - 34142358
Alignment:
Q  233 gctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  34142418 gctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34142358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 34155034 - 34154974
Alignment:
Q  233 gctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  34155034 gctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 34154974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 6728193 - 6728246
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaat 274  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||    
T  6728193 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaat 6728246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 2817901 - 2817973
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| ||||||||||||||   |||||| ||||||||||  |||||||||| ||||| ||||||||||||    
T  2817901 tataaatagagagctcgggaatgagattctttactccaaaaccaagaatcgaatcctcttctctggttttctc 2817973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 29491005 - 29491061
Alignment:
Q  250 ttcactccaaaactgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    ||||||||||||||||||||| ||||||||| |||| |||| |||||||||| ||||    
T  29491005 ttcactccaaaactgagaatcaaatactcttctctgattttatctcctctcttctcc 29491061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 17510571 - 17510328
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510571 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 17510472  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510471 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 17510372  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  17510371 tgagaatcgaatactcttctctggttttctctcctctcttctcc 17510328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 42020086 - 42019843
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  42020086 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactaatgtaaaatgtg 42019987  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42019986 aattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 42019887  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  42019886 tgagaatcgaatactcttctctggttttctctcctctcttctcc 42019843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 89 - 306
Target Start/End: Complemental strand, 17505440 - 17505223
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  17505440 cttggaatatactagtgagtttgtggagcctttggaatgtaaacacaaggatggaaaaactattgtaaagtgtgaattgaaaattttatgtcccacatcg 17505341  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17505340 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 17505241  T
Q  289 ttctctcctctctgctcc 306  Q
    ||||||||||||| ||||    
T  17505240 ttctctcctctcttctcc 17505223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 42024866 - 42024623
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  42024866 ggaacactagtgtataatgaaaaaaacttgaagtatactagtgagtttgtggagcctttggaatgtaaacataaggatggagaaactagtgtaaaatgtg 42024767  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42024766 aattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaat 42024667  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  42024666 tgagaatcgaatactcttctctggttttctctcctctcttctcc 42024623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 89 - 306
Target Start/End: Complemental strand, 43580147 - 43579930
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580147 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 43580048  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| ||    
T  43580047 ggtagatcacatactctagtagaaatcctccttataaattgagagctcgggaatagtatttttcacaccaaaactgagaatcgaatactcttctctgatt 43579948  T
Q  289 ttctctcctctctgctcc 306  Q
    ||||||||||||| ||||    
T  43579947 ttctctcctctcttctcc 43579930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 89 - 301
Target Start/End: Complemental strand, 41859071 - 41858861
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||    
T  41859071 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggaaaaattagtgtaaagtgtgaattgaaaattctatgtcccacatcg 41858972  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41858971 ggtagatc--acactctagtagaaattctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 41858874  T
Q  289 ttctctcctctct 301  Q
    |||||| ||||||    
T  41858873 ttctcttctctct 41858861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 41853956 - 41853846
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41853956 cttggagtatactagggagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattctatgtcccacatcg 41853857  T
Q  189 ggtagatcaca 199  Q
    |||||||||||    
T  41853856 ggtagatcaca 41853846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 1413100 - 1413220
Alignment:
Q  90 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 189  Q
    |||||||||||||||   | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |     
T  1413100 ttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattga 1413199  T
Q  190 gtagatcacacactctagtag 210  Q
    |||||||||||||||||||||    
T  1413200 gtagatcacacactctagtag 1413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 36254638 - 36254517
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   | ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |    
T  36254638 cttggagtatactagttgttatgtggagacattggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgttccacattg 36254539  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  36254538 ggtagatcacacactctagtag 36254517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 24770605 - 24770752
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||    
T  24770605 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtg 24770704  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  24770705 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 24770752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 26709804 - 26709688
Alignment:
Q  94 agtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtag 193  Q
    |||||||||||  ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  26709804 agtatactagttggtttgtggagcctatggaatgtaaacacaagaatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgagtag 26709705  T
Q  194 atcacacactctagtag 210  Q
    || ||||| | ||||||    
T  26709704 attacacattgtagtag 26709688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 26979538 - 26979422
Alignment:
Q  94 agtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtag 193  Q
    |||||||||||  ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  26979538 agtatactagttggtttgtggagcctatggaatgtaaacacaagaatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgagtag 26979439  T
Q  194 atcacacactctagtag 210  Q
    || ||||| | ||||||    
T  26979438 attacacattgtagtag 26979422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 24776116 - 24776206
Alignment:
Q  120 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24776116 ttggaatgtaaacacaatgatgtagaaactagtataaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 24776206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 1413806 - 1413878
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  1413806 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttctc 1413878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 17508676 - 17508630
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17508676 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 17508630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 41857195 - 41857149
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41857195 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 41857149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 42023588 - 42023542
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42023588 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 42023542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 24776563 - 24776635
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||| ||| | |||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  24776563 tataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctc 24776635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 24772849 - 24772895
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  24772849 catcactaagaatggtatttttgttgggaaaaggtacgccactgatg 24772895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 26709444 - 26709372
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | | |||||||||||||||||||||||| |||| ||||| | ||||||||||    
T  26709444 tataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttctc 26709372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 26979178 - 26979106
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | | |||||||||||||||||||||||| |||| ||||| | ||||||||||    
T  26979178 tataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttctc 26979106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 36254177 - 36254105
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| ||||||| |||||| | ||||||||||||||||| ||||||||||| ||||| ||| ||||||||    
T  36254177 tataaatagagagcttgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctagttttctc 36254105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 24771108 - 24771180
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||| ||| | |||||||| ||||||||||  |||||| || |||||| ||||||||||||    
T  24771108 tataaatagagagctcaggattggtattctttactccaaaaccaagaatcaaacactcttctctggttttctc 24771180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 8984987 - 8985230
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8984987 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 8985086  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985087 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 8985186  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  8985187 tgagaatcgaatactcttctctggttttctctcctctcttctcc 8985230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 13701023 - 13700780
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13701023 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 13700924  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700923 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 13700824  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  13700823 tgagaatcgaatactcttctctggttttctctcctctcttctcc 13700780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 21304535 - 21304778
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304535 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 21304634  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304635 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 21304734  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  21304735 tgagaatcgaatactcttctctggttttctctcctctcttctcc 21304778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 8979867 - 8980110
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979867 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 8979966  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8979967 aattgaaaattttatgtcccatatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgagaatagtattcttcactccaaaac 8980066  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  8980067 tgagaatcgaatactcttctctggttttctctcctctcttctcc 8980110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 21299415 - 21299658
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21299415 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtg 21299514  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21299515 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaac 21299614  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  21299615 tgagaatcgaatactcttctctggttttctctcctctcttctcc 21299658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 54991989 - 54991746
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54991989 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 54991890  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  54991889 aattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgaaagctcgggaatagtattcttcacttcaaaac 54991790  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  54991789 tgagaatcgaatactcttctctggttttctctcctctcttctcc 54991746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 39999609 - 39999405
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999609 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 39999510  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39999509 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 39999410  T
Q  289 ttctc 293  Q
    |||||    
T  39999409 ttctc 39999405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 40004567 - 40004363
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004567 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 40004468  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40004467 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 40004368  T
Q  289 ttctc 293  Q
    |||||    
T  40004367 ttctc 40004363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 54343743 - 54343539
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54343743 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 54343644  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54343643 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 54343544  T
Q  289 ttctc 293  Q
    |||||    
T  54343543 ttctc 54343539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 54348897 - 54348693
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348897 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 54348798  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54348797 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 54348698  T
Q  289 ttctc 293  Q
    |||||    
T  54348697 ttctc 54348693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 54990392 - 54990635
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    ||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54990392 ggaacactaatgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgttaacacaaggatggagaaactagtgtaaagtgtg 54990491  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  54990492 aattgaaaattttatgtcccacatcggatagatcacacactctagtagaaattctccttataaattgagagctcgggtatagtattcttcactccaaaac 54990591  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||| ||||||||| ||| |||||||||||||||| ||||    
T  54990592 tgagaatcaaatactcttctcttgttttctctcctctctactcc 54990635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 36359868 - 36359664
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36359868 cttggagtatactagtgagtttgtggagcctttgaaatgttaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 36359769  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  36359768 ggtagatcacacactctagtagaaattctccttataaattgagagctcaggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 36359669  T
Q  289 ttctc 293  Q
    |||||    
T  36359668 ttctc 36359664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 36354682 - 36354478
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36354682 cttggagtatactagtgaatttgtggagcctttggaatgttaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 36354583  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  36354582 ggtagatcacacactctagtagaaatcctctttataaattgagagctcagaaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 36354483  T
Q  289 ttctc 293  Q
    |||||    
T  36354482 ttctc 36354478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 53798450 - 53798329
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  53798450 cttggagtatactagttggtttgtggagcctttggaatgtaaacacaagaatggagaaactagtgtaaagtgtgaattgaaaattttatgtcctacattg 53798351  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  53798350 ggtagatcacacactctagtag 53798329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 41394005 - 41393858
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | |||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41394005 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtgaagcctttggaatgtaaacacaaggatggaaaaactagtgtaaagtgtg 41393906  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  41393905 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 41393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 51018732 - 51018853
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||| |||||||||   | ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  51018732 cttggaatatactagttgttatgtggagactttggaatgtacacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 51018831  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  51018832 ggtagatcacacactctagtag 51018853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 9763273 - 9763420
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | ||||||| |||||||||||||||||||||||| ||||||||||||||||  ||    
T  9763273 ggaacactagtgtatattggcataaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagcatg 9763372  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||    
T  9763373 aattgaaaattttatgtcccacattgagtagatcacacactctagtag 9763420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 13695904 - 13695757
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||    
T  13695904 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtg 13695805  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  13695804 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 13695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 13711517 - 13711370
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||    
T  13711517 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtg 13711418  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  13711417 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 13711370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 4207188 - 4207042
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||| ||||| |||| ||||||||||||||||||||    
T  4207188 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaa-cacaatgatgtagaaactagtgtaaagtgtg 4207090  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  4207089 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 4207042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 47045647 - 47045767
Alignment:
Q  90 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 189  Q
    |||||||||||||||   | || |||| | || |||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||| ||    
T  47045647 ttggagtatactagttgttatgaggagacattagaatgtaaacacaatgaaatagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 47045746  T
Q  190 gtagatcacacactctagtag 210  Q
     ||||||||||||||||||||    
T  47045747 atagatcacacactctagtag 47045767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 13695503 - 13695431
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  13695503 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatactcttctctggttttctc 13695431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 9763771 - 9763843
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | ||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  9763771 tataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 9763843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 41393584 - 41393512
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  41393584 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 41393512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 53797970 - 53797898
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  53797970 tataaatagagagctcgggattagcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 53797898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 13699113 - 13699067
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13699113 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 13699067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 21301325 - 21301371
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21301325 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 21301371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 36357916 - 36357870
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36357916 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 36357870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 40002844 - 40002798
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40002844 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 40002798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 51019117 - 51019199
Alignment:
Q  211 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||||  ||||||| |||| ||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  51019117 aaatcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 51019199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 54346978 - 54346932
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54346978 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 54346932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 13711010 - 13710938
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | |||||||||||||||||  |||||||||| ||||| ||||||||||||    
T  13711010 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 13710938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 47046060 - 47046132
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||| ||||||||||||    
T  47046060 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctc 47046132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 8981777 - 8981823
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  8981777 catcactaagaatggtatttttgttgggaaagggtacgccattgatg 8981823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 13702991 - 13702945
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  13702991 catcactaagaatggtacttttgttgggaaagggtacgccactgatg 13702945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 27711836 - 27711593
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711836 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 27711737  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711736 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 27711637  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  27711636 tgagaatcgaatactcttctctggttttctctcctctcttctcc 27711593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 37404026 - 37404243
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404026 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 37404125  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37404126 ggtagatcacacactctagtagaaatcctccttataaattgagagcccgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 37404225  T
Q  289 ttctctcctctctgctcc 306  Q
    ||||||||||||| ||||    
T  37404226 ttctctcctctcttctcc 37404243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 37409145 - 37409362
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409145 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 37409244  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37409245 ggtagatcacacactctagtataaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 37409344  T
Q  289 ttctctcctctctgctcc 306  Q
    ||||||||||||| ||||    
T  37409345 ttctctcctctcttctcc 37409362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 89 - 292
Target Start/End: Original strand, 34317840 - 34318043
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317840 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 34317939  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34317940 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 34318039  T
Q  289 ttct 292  Q
    ||||    
T  34318040 ttct 34318043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 89 - 306
Target Start/End: Complemental strand, 27716930 - 27716713
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27716930 cttggagtatactagtgagtttgtggagcctttggaacgtaagcacaaggatggagaaactagtgtaaagtgtgaattgaaatttttatgtcccacatcg 27716831  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27716830 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgataatcgaatactcttatctggtt 27716731  T
Q  289 ttctctcctctctgctcc 306  Q
    ||||||||||||| ||||    
T  27716730 ttctctcctctcttctcc 27716713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 293
Target Start/End: Original strand, 36684270 - 36684474
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684270 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 36684369  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  36684370 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttgactccaaaactgagaatcgaatactcttctctggtt 36684469  T
Q  289 ttctc 293  Q
    |||||    
T  36684470 ttctc 36684474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 11250731 - 11250948
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11250731 cttggagtataccagtgagtttgtggagtctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 11250830  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  11250831 gttagatcacacactctagtagaaatcctccttataaattgagagctcgtgaatagtattctttactccaaaattgagaatcgaatactcttctctggtt 11250930  T
Q  289 ttctctcctctctgctcc 306  Q
    ||||||||||||| ||||    
T  11250931 ttctctcctctcttctcc 11250948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 5725512 - 5725365
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725512 ggaacactagtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 5725413  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  5725412 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 5725365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 3585448 - 3585301
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3585448 ggaacactagtgtatattggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaaatgtg 3585349  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  3585348 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 3585301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 64 - 210
Target Start/End: Complemental strand, 5730917 - 5730771
Alignment:
Q  64 gaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtga 163  Q
    ||||||||||||||||||        |||||||||||||||  ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  5730917 gaacactagtgtataatggaaaaaatttggagtatactagttggtttgtgaaacctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtga 5730818  T
Q  164 attgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  5730817 attgaaaattttatgtcccacattgggtagatcacacactctagtag 5730771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 48245998 - 48246119
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   | ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |    
T  48245998 cttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattaaaatttttatgtcccacattg 48246097  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  48246098 ggtagatcacacactctagtag 48246119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 50959010 - 50959069
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaac 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50959010 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaagaatggagaaac 50959069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 27715046 - 27715000
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27715046 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 27715000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 5730446 - 5730374
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  5730446 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 5730374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 3584942 - 3584870
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||| ||| | | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  3584942 tataaatagagagctcaggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 3584870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 37405908 - 37405954
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||| || |||||||||||||||||||||||||||||    
T  37405908 catcactaagaatgataattttgttgggaaagggtacgccactgatg 37405954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 48246427 - 48246509
Alignment:
Q  211 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||||  ||||||| |||| ||||| ||| | |||||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  48246427 aaatcctctctataaatagagacctcggaaatgggattcttcactacaaaaccgagaatcgaatcctcttctctggttttctc 48246509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 5728721 - 5728674
Alignment:
Q  13 catcactaagaatggtattttt-gttgggaaagggtacgccactgatg 59  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  5728721 catcactaagaatgatattttttgttgggaaagggtacgccactgatg 5728674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 89 - 306
Target Start/End: Complemental strand, 4050 - 3833
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 3951  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3950 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 3851  T
Q  289 ttctctcctctctgctcc 306  Q
    ||||||||||||| ||||    
T  3850 ttctctcctctcttctcc 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 2166 - 2120
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2166 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 2120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 63 - 293
Target Start/End: Complemental strand, 33238568 - 33238338
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238568 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 33238469  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238468 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 33238369  T
Q  263 tgagaatcgaatactcttatctggttttctc 293  Q
    |||||||||||||||||| ||||||||||||    
T  33238368 tgagaatcgaatactcttctctggttttctc 33238338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 63 - 293
Target Start/End: Complemental strand, 33243745 - 33243515
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33243745 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacacaaggatggagaaactagtgtaaagtgtg 33243646  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243645 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 33243546  T
Q  263 tgagaatcgaatactcttatctggttttctc 293  Q
    |||||||||||||||||| ||||||||||||    
T  33243545 tgagaatcgaatactcttctctggttttctc 33243515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 47994340 - 47994136
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994340 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 47994241  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47994240 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 47994141  T
Q  289 ttctc 293  Q
    |||||    
T  47994140 ttctc 47994136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 47999515 - 47999311
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47999515 cttggagtatattagtgagtttgtggagcctttggaatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtctcacatcg 47999416  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47999415 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 47999316  T
Q  289 ttctc 293  Q
    |||||    
T  47999315 ttctc 47999311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 21080321 - 21080468
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21080321 ggaacactagtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 21080420  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||    
T  21080421 aattgaaaattttatgtcccacgttgggtagatcacacactctagtag 21080468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 2233978 - 2234099
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  2233978 cttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 2234077  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  2234078 ggtagatcacacactctagtag 2234099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 32211965 - 32212112
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32211965 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgttgagactttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 32212064  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  32212065 aattgaaaattttatgtctcacattgggtagatcacacactctagtag 32212112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 42572747 - 42572600
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  42572747 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtg 42572648  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  42572647 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 42572600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 17496221 - 17496100
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  17496221 cttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 17496122  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  17496121 ggtagatcacacactctagtag 17496100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 17556993 - 17557114
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  17556993 cttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 17557092  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  17557093 ggtagatcacacactctagtag 17557114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 12935231 - 12935084
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  12935231 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtg 12935132  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  12935131 aattgaaaattttatgtcccacattgggtagatcacacactttagtag 12935084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 19308876 - 19309023
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  19308876 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtg 19308975  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  19308976 aattgaaaattttatgtcccacattggatagatcacacactctagtag 19309023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 47176496 - 47176643
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||    
T  47176496 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtg 47176595  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  47176596 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 47176643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 16538699 - 16538813
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   | ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |    
T  16538699 cttggagtatactagttgttatgtggagactttggaatgtagacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccatattg 16538798  T
Q  189 ggtagatcacacact 203  Q
     ||||||||||||||    
T  16538799 agtagatcacacact 16538813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 16626963 - 16626849
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   | ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |    
T  16626963 cttggagtatactagttgttatgtggagactttggaatgtagacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccatattg 16626864  T
Q  189 ggtagatcacacact 203  Q
     ||||||||||||||    
T  16626863 agtagatcacacact 16626849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 43893689 - 43893542
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||| ||||||||||    
T  43893689 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagcgtaaagtgtg 43893590  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  43893589 aattgaaaattttatgtccctcattgggtagatcacacactctagtag 43893542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 47544749 - 47544828
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatgg 142  Q
    |||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47544749 ggaacactagtgtataatgaaaaaaacttggagtatactagagagtttgtggagcctttggaatgtaaacacaaggatgg 47544828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 2234384 - 2234456
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  2234384 tataaatagagagctcgggattagtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 2234456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 12934738 - 12934666
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  12934738 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 12934666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 33241778 - 33241732
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33241778 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 33241732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 47997575 - 47997529
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47997575 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 47997529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 19309365 - 19309437
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||| ||| ||||| ||||||||||||    
T  19309365 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcaaatcctcttctctggttttctc 19309437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21080793 - 21080865
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | | |||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  21080793 tataaatagagagctcgggatttgcattcttcacttcaaaactgagaatcgaatcctcttctctggttttctc 21080865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 42572286 - 42572214
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||| ||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  42572286 tataaatagagaactcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 42572214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 43893210 - 43893138
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||  ||||||||||| ||||| ||||||||||||    
T  43893210 tataaatagagagctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctctggttttctc 43893138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 16539166 - 16539238
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||  ||| ||||| ||||||||||||    
T  16539166 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttctc 16539238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 16626496 - 16626424
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||  ||| ||||| ||||||||||||    
T  16626496 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttctc 16626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 17495744 - 17495672
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | |||||| |||||||||| |||||| |||| ||||| ||||||||||||    
T  17495744 tataaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctggttttctc 17495672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 17557470 - 17557542
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | |||||| |||||||||| |||||| |||| ||||| ||||||||||||    
T  17557470 tataaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctggttttctc 17557542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 47176904 - 47176976
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| ||||||||||||||   ||||||||||||||||| || |||||||| ||||| ||||||||||||    
T  47176904 tataaatagagagctcgggaatgagattcttcactccaaaaccgataatcgaatcctcttctctggttttctc 47176976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 32212419 - 32212479
Alignment:
Q  233 gctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||| |||| |||||||    
T  32212419 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctgattttctc 32212479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 89 - 306
Target Start/End: Complemental strand, 55129276 - 55129060
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129276 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaag-atggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 55129178  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  55129177 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 55129078  T
Q  289 ttctctcctctctgctcc 306  Q
    ||||||||||||| ||||    
T  55129077 ttctctcctctcttctcc 55129060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 96 - 306
Target Start/End: Complemental strand, 17369199 - 17368989
Alignment:
Q  96 tatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtagat 195  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17369199 tatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtagat 17369100  T
Q  196 cacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctctc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17369099 cacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctc 17369000  T
Q  296 ctctctgctcc 306  Q
    |||||| ||||    
T  17368999 ctctcttctcc 17368989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 63 - 293
Target Start/End: Original strand, 20090191 - 20090421
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||    
T  20090191 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacatcaggatggagaaactagtgtaaagtgtg 20090290  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20090291 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 20090390  T
Q  263 tgagaatcgaatactcttatctggttttctc 293  Q
    |||||||||||||||||| ||||||||||||    
T  20090391 tgagaatcgaatactcttctctggttttctc 20090421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 63 - 293
Target Start/End: Original strand, 20095316 - 20095546
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||    
T  20095316 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacatcaggatggagaaactagtgtaaagtgtg 20095415  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20095416 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 20095515  T
Q  263 tgagaatcgaatactcttatctggttttctc 293  Q
    |||||||||||||||||| ||||||||||||    
T  20095516 tgagaatcgaatactcttctctggttttctc 20095546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 89 - 293
Target Start/End: Original strand, 15762585 - 15762789
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15762585 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 15762684  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15762685 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 15762784  T
Q  289 ttctc 293  Q
    |||||    
T  15762785 ttctc 15762789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 89 - 293
Target Start/End: Original strand, 15767746 - 15767950
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15767746 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 15767845  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15767846 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 15767945  T
Q  289 ttctc 293  Q
    |||||    
T  15767946 ttctc 15767950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 3481649 - 3481796
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481649 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 3481748  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  3481749 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 3481796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 34128437 - 34128558
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34128437 cttggagtatactagttgatttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 34128536  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  34128537 ggtagatcacacactctagtag 34128558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 17358686 - 17358566
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  17358686 cttggattatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaa-tagtgtaaagtgtgaattgaaaattttatgtcccacattg 17358588  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  17358587 ggtagatcacacactctagtag 17358566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 30338126 - 30338247
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  30338126 cttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaattagtgtaaagtgtgaattgaaaattttatgtcccacattg 30338225  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  30338226 ggtagatcacacactctagtag 30338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 30341204 - 30341351
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341204 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 30341303  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||    
T  30341304 aattgaaaattttatggcccacattaggtagatcacacactctagtag 30341351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 54271433 - 54271312
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||| |||||||||||   | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  54271433 cttgaagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtctaaagtgtgaattgaaaattttatgtcccacattg 54271334  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  54271333 ggtagatcacacactctagtag 54271312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 3476249 - 3476339
Alignment:
Q  120 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3476249 ttggaatgtaaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 3476339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 4117007 - 4117097
Alignment:
Q  120 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4117007 ttggaatgtaaacacaatgatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 4117097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 3482166 - 3482238
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  3482166 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttctc 3482238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 17358179 - 17358107
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | | ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  17358179 tataaatagagagctcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggttttctc 17358107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 54270986 - 54270914
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  54270986 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 54270914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 3478439 - 3478485
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3478439 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 3478485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 15764511 - 15764557
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15764511 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 15764557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 17362680 - 17362634
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17362680 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 17362634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 17367322 - 17367276
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17367322 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 17367276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 20092142 - 20092188
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20092142 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 20092188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 4117345 - 4117417
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||| | ||||||||||    
T  4117345 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 4117417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 30338506 - 30338578
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  30338506 tataaatagagagctcgggatttggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 30338578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 34128923 - 34128995
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| ||||| |||||| | | ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  34128923 tataaatagagaggtcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggttttctc 34128995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 3476699 - 3476771
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||   |||||||||| ||||| ||||||||||||    
T  3476699 tataaatagagagctcgggaatgggattcttcactccaaaaacaagaatcgaatcctcttctctggttttctc 3476771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 10321784 - 10321712
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | | ||||||||||||||||| |||||| |||| ||||| || |||||||||    
T  10321784 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaattgaatcctcttctcaggttttctc 10321712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 30341720 - 30341771
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcga 272  Q
    ||||||| |||||||||||| | | ||||||||||||||||| |||||||||    
T  30341720 tataaatagagagctcgggattgggattcttcactccaaaaccgagaatcga 30341771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 10321861 - 10321816
Alignment:
Q  246 attcttcactccaaaactgagaatcgaatactcttatctggttttc 291  Q
    ||||||||| ||||||| ||||||||||| ||||| ||||||||||    
T  10321861 attcttcaccccaaaaccgagaatcgaatcctcttctctggttttc 10321816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 32085 - 31881
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32085 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 31986  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31985 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggtt 31886  T
Q  289 ttctc 293  Q
    |||||    
T  31885 ttctc 31881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 26913 - 26709
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26913 cttggagtatactagtgagtttgtggagcctttggaatgtaaacaaaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 26814  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26813 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggtt 26714  T
Q  289 ttctc 293  Q
    |||||    
T  26713 ttctc 26709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 30148 - 30102
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30148 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 30102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 40392832 - 40392589
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  40392832 ggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttgcaatgtaaacataaggatggagaaactagtgtaaagtgtg 40392733  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40392732 aattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaac 40392633  T
Q  263 tgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
    ||||||||||||||| || |||| ||||||||||||||| ||||    
T  40392632 tgagaatcgaatacttttctctgattttctctcctctcttctcc 40392589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 293
Target Start/End: Original strand, 42728175 - 42728379
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728175 cttggagtttactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 42728274  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42728275 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 42728374  T
Q  289 ttctc 293  Q
    |||||    
T  42728375 ttctc 42728379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 90 - 293
Target Start/End: Original strand, 42723007 - 42723210
Alignment:
Q  90 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 189  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723007 ttggagtttactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 42723106  T
Q  190 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42723107 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttt 42723206  T
Q  290 tctc 293  Q
    ||||    
T  42723207 tctc 42723210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 44096842 - 44096638
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44096842 cttggagtatactagtgagtttgtggagcatttggaatgtaaacaaaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 44096743  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  44096742 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggtt 44096643  T
Q  289 ttctc 293  Q
    |||||    
T  44096642 ttctc 44096638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 89 - 280
Target Start/End: Original strand, 44754161 - 44754352
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44754161 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 44754260  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactctt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44754261 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactctt 44754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 89 - 280
Target Start/End: Original strand, 44759327 - 44759518
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44759327 cttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaattagtgtaaagtgtgaattgaaaattttatgtcccacatcg 44759426  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactctt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44759427 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactctt 44759518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 40518075 - 40518297
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatc- 187  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40518075 cttggagtataatagtgagtttgtggagcctttggaatataaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 40518174  T
Q  188 gggtagatcacacactctagtagaaatcctcctt----ataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatc 283  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  40518175 gggtagatcacacactctagtagaaatcctccttattaataaattgagagctcgtgaatagtattcttcactccaaaactgagaatcgaatactcttctc 40518274  T
Q  284 tggttttctctcctctctgctcc 306  Q
    | |||||||||||||||| ||||    
T  40518275 ttgttttctctcctctcttctcc 40518297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 92 - 280
Target Start/End: Complemental strand, 40520122 - 40519929
Alignment:
Q  92 ggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatc-ggg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40520122 ggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggg 40520023  T
Q  191 tagatcacacactctagtagaaatcctcctt----ataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactctt 280  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40520022 tagatcacacactctagtagaaatcctccttatgaataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactctt 40519929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 4162895 - 4163042
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||| ||||||||||       ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4162895 ggaacactggtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 4162994  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  4162995 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 4163042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 28751021 - 28751168
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751021 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 28751120  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  28751121 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 28751168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 42724940 - 42724986
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42724940 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 42724986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 44756092 - 44756138
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44756092 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 44756138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 4163331 - 4163403
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| | | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  4163331 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 4163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 28751483 - 28751555
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| ||||||||||||||   ||||||||||||||||| ||||||||||| ||||| | ||||||||||    
T  28751483 tataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 28751555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 3564 - 3360
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3564 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcc 3465  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3464 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 3365  T
Q  289 ttctc 293  Q
    |||||    
T  3364 ttctc 3360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 293
Target Start/End: Original strand, 80971 - 81175
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  80971 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcc 81070  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  81071 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 81170  T
Q  289 ttctc 293  Q
    |||||    
T  81171 ttctc 81175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 32011066 - 32010862
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32011066 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 32010967  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32010966 ggtagatcatacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 32010867  T
Q  289 ttctc 293  Q
    |||||    
T  32010866 ttctc 32010862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 32016240 - 32016036
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32016240 cttggagtatactagtgaatttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 32016141  T
Q  189 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32016140 ggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggtt 32016041  T
Q  289 ttctc 293  Q
    |||||    
T  32016040 ttctc 32016036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 2165394 - 2165638
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttgg-aatgtaaacacaaggatggagaaactagtgtaaagtgt 161  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  2165394 ggaacactagtgtataatgaaaaaattttggagtatactagtgagtttgtggagtctttgggaatgtaaacacaaggatggagaaactagtgtaaagtgt 2165493  T
Q  162 gaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaa 261  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2165494 gaattgaaaattttatgtctcacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaa 2165593  T
Q  262 ctgagaatcgaatactcttatctggttttctctcctctctgctcc 306  Q
     |||||||| ||| ||||| ||| |||||||||| ||||| ||||    
T  2165594 ttgagaatcaaatgctcttctctagttttctctcatctcttctcc 2165638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 43998546 - 43998693
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43998546 ggaacactagtgtataatgaaaaaaacttggagtatactagttggtttgtggagcctttgaaatgtaaacacaaggatggagaaactagtgtaaagtgtg 43998645  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  43998646 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 43998693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 17955134 - 17955281
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||||||       ||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17955134 ggaacactagtgtataatggaaaagacttagagtatactagttgttttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtgaagtgtg 17955233  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  17955234 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 17955281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 24885445 - 24885324
Alignment:
Q  89 cttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcg 188  Q
    ||||||||||||||||   | ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  24885445 cttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattg 24885346  T
Q  189 ggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||    
T  24885345 ggtagatcacacactctagtag 24885324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 42513848 - 42513995
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | ||||||| | |||||||||||||||||||||| ||||| ||||||||||||||    
T  42513848 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagacattggaatgtaaacacaaggatgtagaaaatagtgtaaagtgtg 42513947  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  42513948 aattgaaaattttatgtcccacattggatagatcacacactctagtag 42513995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 21641184 - 21641273
Alignment:
Q  120 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21641184 ttggaatgtaaatacaaggatgtagat-ctagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 21641273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 24885064 - 24884982
Alignment:
Q  211 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  24885064 aaatcctctctataaatagagagctcgggaatggaattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 24884982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 21645574 - 21645620
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21645574 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 21645620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 32014301 - 32014255
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32014301 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 32014255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21643835 - 21643907
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||| ||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  21643835 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 21643907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21643020 - 21643092
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||| ||||||||| | ||||||||||||||||| ||||||||||| ||||| | ||||||||||    
T  21643020 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 21643092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21643395 - 21643467
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||| ||||||||| | ||||||||||||||||| ||||||||||| ||||| | ||||||||||    
T  21643395 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctc 21643467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 42514182 - 42514245
Alignment:
Q  229 gagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttct 292  Q
    ||||||||||||||   ||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  42514182 gagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttct 42514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21641520 - 21641592
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||| ||||||||| | ||||||||||||||||  ||||||||||| ||||| | ||||||||||    
T  21641520 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21641592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21641895 - 21641967
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||| ||||||||| | ||||||||||||||||  ||||||||||| ||||| | ||||||||||    
T  21641895 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21641967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21642270 - 21642342
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||| ||||||||| | ||||||||||||||||  ||||||||||| ||||| | ||||||||||    
T  21642270 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21642342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 21642645 - 21642717
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||| ||||||||| | ||||||||||||||||  ||||||||||| ||||| | ||||||||||    
T  21642645 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctc 21642717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 43998984 - 43999056
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||| |   |||||| |||| ||||||||||||||||| ||||| |||| |||||||    
T  43998984 tataaatagagagctcgggatttacattctttactctaaaactgagaatcgaatcctcttctctgattttctc 43999056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 19434043 - 19434003
Alignment:
Q  17 actaagaatggtatttttgttgggaaagggtacgccactga 57  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  19434043 actaaggatggggtttttgttgggaaagggtacgccactga 19434003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 19570192 - 19570152
Alignment:
Q  17 actaagaatggtatttttgttgggaaagggtacgccactga 57  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  19570192 actaaggatggggtttttgttgggaaagggtacgccactga 19570152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 8534 - 8681
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8534 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 8633  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  8634 aatttaaaattttatgtcccacattgggtagatcacacactctagtag 8681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 8962 - 9034
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | ||||||||||||||||  ||||||||||| ||||| ||| ||||||||    
T  8962 tataaatagagagctcgggaatgggattcttcactccaaaaacgagaatcgaatcctcttctctagttttctc 9034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 12986 - 13133
Alignment:
Q  63 ggaacactagtgtataatgnnnnnnncttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtg 162  Q
    |||||||||||||||| ||       ||||||||||||||||   | || |||| | ||||||||||||||||| |||| ||||||||||||||||||||    
T  12986 ggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaagtgtg 13085  T
Q  163 aattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  13086 aattgaaaattttatgtcccacattgggtagatcacacactctagtag 13133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 18500 - 18590
Alignment:
Q  120 ttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18500 ttggaatgtaaacacaatgatgtagaaactagtataaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 18590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 15233 - 15279
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15233 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 15279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 13493 - 13565
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||||||||| | |||||||||||||||||  |||||||||| ||||| ||||||||||||    
T  13493 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 13565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 18946 - 19018
Alignment:
Q  221 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||| |||||||| ||| | |||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  18946 tataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctc 19018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 37712 - 37654
Alignment:
Q  152 tgtaaagtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtag 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  37712 tgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactccagtag 37654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 37361 - 37279
Alignment:
Q  211 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttatctggttttctc 293  Q
    ||||||||  ||||||| ||||||||||||||   ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  37361 aaatcctctctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttctc 37279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 15588 - 15542
Alignment:
Q  13 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15588 catcactaagaatggtatttttgttgggaaagggtacgccactgatg 15542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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