View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17185_low_20 (Length: 307)

Name: NF17185_low_20
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17185_low_20
NF17185_low_20
[»] chr4 (2 HSPs)
chr4 (1-230)||(26573477-26573705)
chr4 (229-294)||(26574123-26574188)
[»] chr2 (19 HSPs)
chr2 (229-297)||(10334888-10334956)
chr2 (229-297)||(10370990-10371058)
chr2 (229-294)||(8574418-8574483)
chr2 (227-290)||(10340609-10340672)
chr2 (1-229)||(10339974-10340214)
chr2 (23-164)||(10370439-10370585)
chr2 (231-294)||(9287760-9287823)
chr2 (1-139)||(10350758-10350901)
chr2 (229-294)||(10346863-10346928)
chr2 (80-164)||(10346306-10346390)
chr2 (229-294)||(11425340-11425405)
chr2 (231-294)||(9285144-9285207)
chr2 (229-290)||(10351330-10351391)
chr2 (229-283)||(9318714-9318768)
chr2 (229-293)||(9291125-9291191)
chr2 (229-279)||(9069022-9069072)
chr2 (237-283)||(9315244-9315290)
chr2 (237-283)||(9326586-9326632)
chr2 (229-294)||(9273220-9273285)
[»] chr3 (1 HSPs)
chr3 (229-297)||(37461562-37461630)
[»] chr8 (1 HSPs)
chr8 (242-294)||(41968355-41968408)
[»] scaffold0667 (1 HSPs)
scaffold0667 (237-283)||(1726-1772)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26573477 - 26573705
Alignment:
Q  1 taatgtttatcacagtattatctttcaacttgattttccaattctcaataaaaactacaaaatgaaattnnnnnnnnnngttccaaaatcatgcaacaca 100  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||    
T  26573477 taatgcttatcacagtat-atctttcaacttgattttccaattctcaataaaaactacaaaatgaaattaaaaaaaaatgttccaaaatcatgcaacaca 26573575  T
Q  101 catttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaatnnnnnnncactataattgcatgatcatttcaaaac 200  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||       ||||||||||| | ||||||||||||||    
T  26573576 catttccaaattcctaaaactataacagtatcatacttacatatggctaaaaatgattttaaaataaaaaaacactataattgtacgatcatttcaaaac 26573675  T
Q  201 aggtatctcatttaaaacagtatggaatac 230  Q
    ||||||||||||||||||||||||||||||    
T  26573676 aggtatctcatttaaaacagtatggaatac 26573705  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 26574123 - 26574188
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26574123 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 26574188  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 10334888 - 10334956
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10334888 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttct 10334956  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 10370990 - 10371058
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10370990 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttct 10371058  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 8574483 - 8574418
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 294  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  8574483 accaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggt 8574418  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 10340609 - 10340672
Alignment:
Q  227 ataccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcac 290  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10340609 ataccgaggtgactaattccatcataagaaacaactggagcatcctgtttcagctgcacttcac 10340672  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10339974 - 10340214
Alignment:
Q  1 taatgtttatcacagtattatctttcaacttgattttccaattctcaataaaaactacaaaatgaaatt--------nnnnnnnnnngttccaaaatcat 92  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||||                  ||| |||||||||    
T  10339974 taatgcttatcacagtattatctttcaacttgatcttcctattcaaaataaaaactacaaaatgaaattaaaaaaaaaaaaaaaaatgtttcaaaatcat 10340073  T
Q  93 gcaacacacatttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaatnnnnnnncactataattgcatgatcat 192  Q
    |||  |||||||||||||||||||||||||||| |||||||| |||| || | ||| |||||||||| ||||        || |||||| | |||||| |    
T  10340074 gca--acacatttccaaattcctaaaactataacagtatcattcttacattttgctaaaaatgatttaaaaaagaaaacacaatataatcgtatgatcct 10340171  T
Q  193 ttcaaaacagg------tatctcatttaaaacagtatggaata 229  Q
    |||||||||||      |||||||||||||| |||||||||||    
T  10340172 ttcaaaacaggtttcgctatctcatttaaaatagtatggaata 10340214  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 10370439 - 10370585
Alignment:
Q  23 tttcaacttgattttccaattctcaataaaaactacaaaatgaaattnnnnnnnnnn-----gttccaaaatcatgcaacacacatttccaaattcctaa 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||               |||||||||||||| ||||||||||| |||||||||||    
T  10370439 tttcaacttgattttcctattctcaataaaaactacaaaatgaaattaaaaaaaaaaataatgttccaaaatcatgtaacacacatttacaaattcctaa 10370538  T
Q  118 aactataaaagtatcatacttatatatggctcaaaatgattttaaaa 164  Q
    ||||| || |||||||| ||||  | ||||| |||||||||| ||||    
T  10370539 aactagaacagtatcattcttaggtttggctaaaaatgatttaaaaa 10370585  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 9287760 - 9287823
Alignment:
Q  231 caaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 294  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9287760 caaggtgactaactccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggt 9287823  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 10350758 - 10350901
Alignment:
Q  1 taatgtttatcacagtattatctttcaacttgattttccaattct-caataaaaactacaaaatgaaatt---nnnnnnnnnngttccaaaatcatgcaa 96  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||             |||||||||||||||||    
T  10350758 taatgcttatcacagtattctctttcaacttgattttccaattctaaaaaaaaaactacaaaatgaaattaaaaaaaaaaaaagttccaaaatcatgcaa 10350857  T
Q  97 cacacatttccaaattcctaaaacta-taaaagtatcatactta 139  Q
    |||||||||| |||||| |||||||| ||| |||||||| ||||    
T  10350858 cacacatttctaaattcttaaaactattaacagtatcattctta 10350901  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 10346863 - 10346928
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 294  Q
    ||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||||    
T  10346863 accaaggtgactaattccatcacaagaaacaaccggtgcttcatgtttcagctgcacttcacaggt 10346928  T

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Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 10346306 - 10346390
Alignment:
Q  80 gttccaaaatcatgcaacacacatttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaa 164  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||| || ||| | |||||| ||||||||    
T  10346306 gttccaaaatcatgcagcacacatttccaaattcataaaactataacagtatcattcttacatttgggtaaaaatgcttttaaaa 10346390  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 11425405 - 11425340
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 294  Q
    |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  11425405 accaaggtgattaattccttcacaagaaacaactcgagtatcctgtttcagctgcacatcacaggt 11425340  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 9285207 - 9285144
Alignment:
Q  231 caaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 294  Q
    |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||    
T  9285207 caagatgactaattccatcacaagaaactacttgagcatcatgtttcagctgcacatcacaggt 9285144  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 10351330 - 10351391
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcac 290  Q
    ||||||||||  ||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  10351330 accaaggtgagcaattccatcacaagaaacaacagaagcatcctatttcagctgcacttcac 10351391  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 9318714 - 9318768
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc 283  Q
    ||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||    
T  9318714 accaaggtttctaattccatcacaagaaacaacttgagtatcctgtttcagctgc 9318768  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 9291125 - 9291191
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaac--tggagcatcctgtttcagctgcacttcacagg 293  Q
    |||||||| |||||||||||||||| |||||||  | ||| |||||||||||||||||| |||||||    
T  9291125 accaaggtaactaattccatcacaacaaacaacttttgagaatcctgtttcagctgcacatcacagg 9291191  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 9069072 - 9069022
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcag 279  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| ||||||||    
T  9069072 accaaggtgactaattacatcacaagaagcaacttgagcatcatgtttcag 9069022  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 9315244 - 9315290
Alignment:
Q  237 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 283  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||    
T  9315244 gactaattccatcacaagaaacaagttgagcatcatgtttcagctgc 9315290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 9326586 - 9326632
Alignment:
Q  237 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 283  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  9326586 gactaattccatcacaagaaacaacttgagtatcctgtatcagctgc 9326632  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 9273220 - 9273285
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 294  Q
    ||||||| |||||||||||| ||||||| ||||| ||||||| ||||  |||||||  ||||||||    
T  9273220 accaaggagactaattccataacaagaagcaacttgagcatcgtgttaaagctgcatatcacaggt 9273285  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 37461562 - 37461630
Alignment:
Q  229 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 297  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||    
T  37461562 accaaggagactaattccatcacaagaaacaacttgagcaccctgtttcagctgcacattacaggttct 37461630  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 41968408 - 41968355
Alignment:
Q  242 attccatcacaagaaacaactggagcatcct-gtttcagctgcacttcacaggt 294  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||    
T  41968408 attccatcagaagaaacaacttgagcatcctggtttcagctgcacatcacaggt 41968355  T

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Target: scaffold0667 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 1726 - 1772
Alignment:
Q  237 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 283  Q
    |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  1726 gactaattccattacaagaaacaacttgagaattctgtttcagctgc 1772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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