View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17185_low_21 (Length: 304)

Name: NF17185_low_21
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17185_low_21
NF17185_low_21
[»] chr7 (11 HSPs)
chr7 (183-286)||(2273744-2273847)
chr7 (6-75)||(2273633-2273702)
chr7 (76-133)||(2272064-2272120)
chr7 (6-63)||(28226458-28226515)
chr7 (6-66)||(36412955-36413015)
chr7 (9-64)||(10026323-10026378)
chr7 (33-63)||(39426217-39426247)
chr7 (34-63)||(25750807-25750836)
chr7 (37-65)||(3835814-3835842)
chr7 (36-64)||(18470286-18470314)
chr7 (36-64)||(32966285-32966313)
[»] chr3 (5 HSPs)
chr3 (6-66)||(54675299-54675359)
chr3 (6-63)||(19234109-19234166)
chr3 (33-66)||(20841228-20841261)
chr3 (36-69)||(1201037-1201070)
chr3 (31-63)||(15646431-15646463)
[»] chr1 (9 HSPs)
chr1 (6-63)||(43021044-43021101)
chr1 (6-66)||(3900930-3900990)
chr1 (6-66)||(50488880-50488940)
chr1 (33-63)||(9361953-9361983)
chr1 (33-63)||(13566656-13566686)
chr1 (36-66)||(21927926-21927956)
chr1 (33-63)||(31588966-31588996)
chr1 (33-63)||(51974398-51974428)
chr1 (36-64)||(44182739-44182767)
[»] scaffold0014 (1 HSPs)
scaffold0014 (33-66)||(195969-196002)
[»] chr2 (5 HSPs)
chr2 (33-66)||(31025173-31025206)
chr2 (36-66)||(10263745-10263775)
chr2 (1-65)||(11083812-11083876)
chr2 (36-64)||(14295993-14296021)
chr2 (38-70)||(38589454-38589486)
[»] chr8 (11 HSPs)
chr8 (6-66)||(40557120-40557180)
chr8 (6-66)||(41411579-41411639)
chr8 (1-63)||(34038819-34038881)
chr8 (33-63)||(39303746-39303776)
chr8 (33-66)||(7483721-7483754)
chr8 (37-66)||(29316043-29316072)
chr8 (1-49)||(4418995-4419043)
chr8 (37-65)||(8554250-8554278)
chr8 (1-57)||(14896547-14896603)
chr8 (37-65)||(15596322-15596350)
chr8 (36-64)||(43553019-43553047)
[»] chr4 (12 HSPs)
chr4 (33-77)||(3802129-3802173)
chr4 (6-54)||(46016706-46016754)
chr4 (1-53)||(46196909-46196960)
chr4 (36-66)||(37502001-37502031)
chr4 (6-56)||(46249960-46250010)
chr4 (33-63)||(53600017-53600047)
chr4 (37-66)||(4201553-4201582)
chr4 (37-70)||(33890213-33890246)
chr4 (36-65)||(38617541-38617570)
chr4 (36-65)||(52677379-52677408)
chr4 (36-65)||(56576337-56576366)
chr4 (36-64)||(16664223-16664251)
[»] chr6 (7 HSPs)
chr6 (1-52)||(31861380-31861431)
chr6 (36-66)||(9838356-9838386)
chr6 (36-66)||(23923947-23923977)
chr6 (36-69)||(19811930-19811963)
chr6 (37-66)||(24635685-24635714)
chr6 (37-66)||(26470958-26470987)
chr6 (33-66)||(34378836-34378869)
[»] scaffold0024 (1 HSPs)
scaffold0024 (33-67)||(89307-89341)
[»] chr5 (4 HSPs)
chr5 (36-65)||(3686354-3686383)
chr5 (36-65)||(28463615-28463644)
chr5 (37-65)||(28620654-28620682)
chr5 (36-64)||(38702102-38702130)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-49)||(15356-15404)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 2273744 - 2273847
Alignment:
Q  183 tgattcaaaccaacatcagtacgattcaagaagccaaaaaatagagaatcctagagtgagatataggtaaacggaccaagtgcatagcgtagatatgcga 282  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2273744 tgattcaaaccaacatcagtaccattcaagaagccaaaaaaaagagaatcctagagtgagatataggtaaacggaccaagtgcatagcgtagatatgcga 2273843  T
Q  283 atta 286  Q
    ||||    
T  2273844 atta 2273847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 2273633 - 2273702
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaatagttagattt 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2273633 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagagagtaatagttagattt 2273702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 2272064 - 2272120
Alignment:
Q  76 atataatctccatacaaatatcaattacttacgaaggcataactttttataaaggctg 133  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  2272064 atataatctccatacagatatcaatta-ttacgaaggcataactttttataaaggctg 2272120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 28226515 - 28226458
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||| |||  |||||||||| ||||| ||| |||||||||||||||||||||||    
T  28226515 ttaaataggaacactaaatccgcactcaaacgacgcttaaaaaggaacggagggagta 28226458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 36412955 - 36413015
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||| |||| ||||| | ||||||||  |||||||||||||||||||| ||||||||    
T  36412955 ttaaataggaacgctaaattcacattcaaactacacttaaaaaggaacggagagagtaata 36413015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 10026323 - 10026378
Alignment:
Q  9 aatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaa 64  Q
    ||||| |||| |||||||||| ||||| |||| ||||||||||||||||| |||||    
T  10026323 aataggaacgttaaatccgcactcaaacgacaattaaaaaggaacggaggaagtaa 10026378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 39426247 - 39426217
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||    
T  39426247 aaatgacacttaaaaaggaacggagggagta 39426217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 25750807 - 25750836
Alignment:
Q  34 aatgacacttaaaaaggaacggagggagta 63  Q
    ||||||||||||||||||||||||||||||    
T  25750807 aatgacacttaaaaaggaacggagggagta 25750836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 3835814 - 3835842
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaat 65  Q
    |||||||||||||||||||||||||||||    
T  3835814 gacacttaaaaaggaacggagggagtaat 3835842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 18470314 - 18470286
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaa 64  Q
    |||||||||||||||||||||||||||||    
T  18470314 tgacacttaaaaaggaacggagggagtaa 18470286  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 32966285 - 32966313
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaa 64  Q
    |||||||||||||||||||||||||||||    
T  32966285 tgacacttaaaaaggaacggagggagtaa 32966313  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 54675299 - 54675359
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||| |||| ||||| | |||||||| ||||||||||||||||||||||||||||||    
T  54675299 ttaaataggaacgctaaattcacattcaaacgacacttaaaaaggaacggagggagtaata 54675359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 19234109 - 19234166
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||||||||| |||||| || | ||| ||||||||||||||| |||||||||||    
T  19234109 ttaaatagaaacgaaaaatccacactaaaacgacacttaaaaaggatcggagggagta 19234166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 20841261 - 20841228
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagtaata 66  Q
    ||||||||||||||||||||||||||||||||||    
T  20841261 aaatgacacttaaaaaggaacggagggagtaata 20841228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 1201070 - 1201037
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaatagtt 69  Q
    ||||| ||||||||||||||||||||||||||||    
T  1201070 tgacaattaaaaaggaacggagggagtaatagtt 1201037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 15646431 - 15646463
Alignment:
Q  31 tcaaatgacacttaaaaaggaacggagggagta 63  Q
    ||||| |||||||||||||||||||||||||||    
T  15646431 tcaaacgacacttaaaaaggaacggagggagta 15646463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 43021101 - 43021044
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagta 63  Q
    ||||||||||||| |||||||| | ||||| ||||||||||||| |||||||||||||    
T  43021101 ttaaatagaaacggtaaatccgtactcaaacgacacttaaaaagaaacggagggagta 43021044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 3900990 - 3900930
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||| |||| ||||| | |||||||| |||||||||||||||||||| |||||||||    
T  3900990 ttaaataggaacgctaaattcacattcaaacgacacttaaaaaggaacggatggagtaata 3900930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 50488880 - 50488940
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||| |||| ||||| | |||||||| |||||||||||||||||||| |||||||||    
T  50488880 ttaaataggaacgctaaattcacattcaaacgacacttaaaaaggaacggatggagtaata 50488940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 9361983 - 9361953
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||    
T  9361983 aaatgacacttaaaaaggaacggagggagta 9361953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 13566686 - 13566656
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||    
T  13566686 aaatgacacttaaaaaggaacggagggagta 13566656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 21927926 - 21927956
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||||||||||||||||||||||||||    
T  21927926 tgacacttaaaaaggaacggagggagtaata 21927956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 31588966 - 31588996
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||    
T  31588966 aaatgacacttaaaaaggaacggagggagta 31588996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 51974398 - 51974428
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||    
T  51974398 aaatgacacttaaaaaggaacggagggagta 51974428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 44182767 - 44182739
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaa 64  Q
    |||||||||||||||||||||||||||||    
T  44182767 tgacacttaaaaaggaacggagggagtaa 44182739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 195969 - 196002
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagtaata 66  Q
    ||||||||||||||||||||||||||||||||||    
T  195969 aaatgacacttaaaaaggaacggagggagtaata 196002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 31025173 - 31025206
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagtaata 66  Q
    ||||||||||||||||||||||||||||||||||    
T  31025173 aaatgacacttaaaaaggaacggagggagtaata 31025206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 10263775 - 10263745
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||||||||||||||||||||||||||    
T  10263775 tgacacttaaaaaggaacggagggagtaata 10263745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11083876 - 11083812
Alignment:
Q  1 gacacttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaat 65  Q
    |||| ||||||||||||| ||||||||||    || |||| |||||||||||||| |||||||||    
T  11083876 gacagttaaatagaaacgttaaatccgcaccagaacgacatttaaaaaggaacggtgggagtaat 11083812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 14295993 - 14296021
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaa 64  Q
    |||||||||||||||||||||||||||||    
T  14295993 tgacacttaaaaaggaacggagggagtaa 14296021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 38589454 - 38589486
Alignment:
Q  38 acacttaaaaaggaacggagggagtaatagtta 70  Q
    ||||||||||||||||||| |||||||||||||    
T  38589454 acacttaaaaaggaacggatggagtaatagtta 38589486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 40557180 - 40557120
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||| || | ||||| | |||||||| |||||||||||||||||||| |||||||||    
T  40557180 ttaaataggaaagctaaattcacattcaaacgacacttaaaaaggaacggatggagtaata 40557120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 41411579 - 41411639
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||| |||| ||||| | |||||||| |||||||||||| ||||||||| |||||||    
T  41411579 ttaaataggaacgctaaattcacattcaaacgacacttaaaaatgaacggaggaagtaata 41411639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34038881 - 34038819
Alignment:
Q  1 gacacttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggagggagta 63  Q
    |||| |||||||| ||||| ||||| ||| | ||| || ||||||||||||||||||||||||    
T  34038881 gacagttaaataggaacgaaaaatctgcactaaaacgatacttaaaaaggaacggagggagta 34038819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 39303746 - 39303776
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||    
T  39303746 aaatgacacttaaaaaggaacggagggagta 39303776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 7483754 - 7483721
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||||||||||||||||||| |||||||||    
T  7483754 aaatgacacttaaaaaggaacggatggagtaata 7483721  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 29316043 - 29316072
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaata 66  Q
    ||||||||||||||||||||||||||||||    
T  29316043 gacacttaaaaaggaacggagggagtaata 29316072  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4418995 - 4419043
Alignment:
Q  1 gacacttaaatagaaacgataaatccgcattcaaatgacacttaaaaag 49  Q
    |||| ||||||||||||| |||||| ||| | |||||||||||||||||    
T  4418995 gacagttaaatagaaacgttaaatctgcagttaaatgacacttaaaaag 4419043  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 8554250 - 8554278
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaat 65  Q
    |||||||||||||||||||||||||||||    
T  8554250 gacacttaaaaaggaacggagggagtaat 8554278  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14896603 - 14896547
Alignment:
Q  1 gacacttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacggag 57  Q
    |||| |||||||| |||| |||||||||| | ||| ||||||||||||| |||||||    
T  14896603 gacagttaaataggaacgttaaatccgcactaaaacgacacttaaaaagaaacggag 14896547  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 15596350 - 15596322
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaat 65  Q
    |||||||||||||||||||||||||||||    
T  15596350 gacacttaaaaaggaacggagggagtaat 15596322  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 43553047 - 43553019
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaa 64  Q
    |||||||||||||||||||||||||||||    
T  43553047 tgacacttaaaaaggaacggagggagtaa 43553019  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 3802173 - 3802129
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagtaatagttagatttat 77  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||    
T  3802173 aaatgacaattaaaaaggaacggagggagtattagttagttttat 3802129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 46016706 - 46016754
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacg 54  Q
    ||||||||||| | |||||||||||||||| |||||||||||| |||||    
T  46016706 ttaaatagaaaagctaaatccgcattcaaacgacacttaaaaaagaacg 46016754  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46196909 - 46196960
Alignment:
Q  1 gacacttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaac 53  Q
    |||| ||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  46196909 gacaattaaatagaaacgctaaatc-gcattcaaacgacacttaaaaaggaac 46196960  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 37502031 - 37502001
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||||||||||||||||||||||||||    
T  37502031 tgacacttaaaaaggaacggagggagtaata 37502001  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 46250010 - 46249960
Alignment:
Q  6 ttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaacgga 56  Q
    ||||||||||| | ||||| |||||||||| |||||||||||| |||||||    
T  46250010 ttaaatagaaaagttaaattcgcattcaaacgacacttaaaaaagaacgga 46249960  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 53600017 - 53600047
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagta 63  Q
    |||||||||||||||||||||||||||||||    
T  53600017 aaatgacacttaaaaaggaacggagggagta 53600047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 4201553 - 4201582
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaata 66  Q
    ||||||||||||||||||||||||||||||    
T  4201553 gacacttaaaaaggaacggagggagtaata 4201582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 33890213 - 33890246
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaatagtta 70  Q
    |||||||||||||||||||||||||||| |||||    
T  33890213 gacacttaaaaaggaacggagggagtaaaagtta 33890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 38617541 - 38617570
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaat 65  Q
    ||||||||||||||||||||||||||||||    
T  38617541 tgacacttaaaaaggaacggagggagtaat 38617570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 52677379 - 52677408
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaat 65  Q
    ||||||||||||||||||||||||||||||    
T  52677379 tgacacttaaaaaggaacggagggagtaat 52677408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 56576337 - 56576366
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaat 65  Q
    ||||||||||||||||||||||||||||||    
T  56576337 tgacacttaaaaaggaacggagggagtaat 56576366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 16664251 - 16664223
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaa 64  Q
    |||||||||||||||||||||||||||||    
T  16664251 tgacacttaaaaaggaacggagggagtaa 16664223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31861431 - 31861380
Alignment:
Q  1 gacacttaaatagaaacgataaatccgcattcaaatgacacttaaaaaggaa 52  Q
    |||| ||||||||||||| |||||  ||| ||||||||||||||||||||||    
T  31861431 gacaattaaatagaaacgttaaatttgcactcaaatgacacttaaaaaggaa 31861380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 9838356 - 9838386
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||||||||||||||||||||||||||    
T  9838356 tgacacttaaaaaggaacggagggagtaata 9838386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 23923947 - 23923977
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||||||||||||||||||||||||||    
T  23923947 tgacacttaaaaaggaacggagggagtaata 23923977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 19811963 - 19811930
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaatagtt 69  Q
    ||||| ||||||||||||||||||||||||||||    
T  19811963 tgacaattaaaaaggaacggagggagtaatagtt 19811930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 24635714 - 24635685
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaata 66  Q
    ||||||||||||||||||||||||||||||    
T  24635714 gacacttaaaaaggaacggagggagtaata 24635685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 26470958 - 26470987
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaata 66  Q
    ||||||||||||||||||||||||||||||    
T  26470958 gacacttaaaaaggaacggagggagtaata 26470987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 34378869 - 34378836
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagtaata 66  Q
    |||||||||||||||||||||||| |||||||||    
T  34378869 aaatgacacttaaaaaggaacggatggagtaata 34378836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 89341 - 89307
Alignment:
Q  33 aaatgacacttaaaaaggaacggagggagtaatag 67  Q
    |||||||||||||||| ||||||||||||||||||    
T  89341 aaatgacacttaaaaatgaacggagggagtaatag 89307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 3686383 - 3686354
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaat 65  Q
    ||||||||||||||||||||||||||||||    
T  3686383 tgacacttaaaaaggaacggagggagtaat 3686354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 28463615 - 28463644
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaat 65  Q
    ||||||||||||||||||||||||||||||    
T  28463615 tgacacttaaaaaggaacggagggagtaat 28463644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 28620654 - 28620682
Alignment:
Q  37 gacacttaaaaaggaacggagggagtaat 65  Q
    |||||||||||||||||||||||||||||    
T  28620654 gacacttaaaaaggaacggagggagtaat 28620682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 38702130 - 38702102
Alignment:
Q  36 tgacacttaaaaaggaacggagggagtaa 64  Q
    |||||||||||||||||||||||||||||    
T  38702130 tgacacttaaaaaggaacggagggagtaa 38702102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15356 - 15404
Alignment:
Q  1 gacacttaaatagaaacgataaatccgcattcaaatgacacttaaaaag 49  Q
    |||| ||||||||||||| |||||| ||| | |||||||||||||||||    
T  15356 gacagttaaatagaaacgttaaatctgcagttaaatgacacttaaaaag 15404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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