View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_24 (Length: 293)
Name: NF17185_low_24
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 76 - 268
Target Start/End: Original strand, 2946735 - 2946927
Alignment:
| Q |
76 |
tacattcttattttaaattatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgctt |
175 |
Q |
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| T |
2946735 |
tacattcttattttaaaatatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgctt |
2946834 |
T |
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| Q |
176 |
ccaaaaccaccaacttttgatttaggaaattagtgcatttttcaataggatcaaaaacccaaataggaaaatatattttaattaatgaggggg |
268 |
Q |
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| T |
2946835 |
ccaaaaccaccaacatttgatttaggaaattagggcatttttcaataggatcaaaaacccaaataggaaaatatattttaattaatgaggggg |
2946927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 250
Target Start/End: Complemental strand, 3353969 - 3353801
Alignment:
| Q |
86 |
ttttaaattatggatatgcataaagctttcttacataaatactccttttttctatgcattaagttcaagcacaaagcttgttaaatgcttccaaaaccac |
185 |
Q |
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| T |
3353969 |
ttttaaattatcgatgtgcataaagctttcttaggtaa-tactccttttt-ctatgcattaagctcaatcacaatgcttgttaaatgcttccaaaaccag |
3353872 |
T |
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| Q |
186 |
caacttttgatttaggaa-----atta--gtgcatttttcaataggatcaaaaacccaaataggaaaatata |
250 |
Q |
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| T |
3353871 |
caacatttgattcaggaaaaagcactaaggtgtatctttcaataggat-aaaaacccaaataggaaaatata |
3353801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 3354185 - 3354135
Alignment:
| Q |
12 |
caaaggagcaataaaactggaaaagcacagtgaaaaaacttgtatggataa |
62 |
Q |
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| T |
3354185 |
caaagcagtaataacattggacaagcacagtgaaaaaacttgtatggataa |
3354135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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