View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_25 (Length: 292)
Name: NF17185_low_25
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 49653587 - 49653305
Alignment:
| Q |
1 |
cttcacagtggatagaaaccttcaagaaccatgtctgtgaaacaaaaccaactttagcttacaaaataaaaaacaaagaaagattttgacaatagggtgt |
100 |
Q |
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| T |
49653587 |
cttcacagtggatagaaaccttcaagaaccatgtctgtgaaacaaaaccaagtttagcttacaaaataaaaaacaaagaaagattttgacaatagggtgt |
49653488 |
T |
|
| Q |
101 |
gattgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatccattagagagaagtggttgggagagtgagagggaattggaaac |
200 |
Q |
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| T |
49653487 |
gattgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatccattagagagaagtggttgggagagtgagagggaattggaaac |
49653388 |
T |
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| Q |
201 |
ttgaaatcaaaatgaaagtgagatgaggaaaatgccaagaaaacaaaggaaacaagccaagatgggtaccaaagtagtataat |
283 |
Q |
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| T |
49653387 |
ttgaaatcaaaatgaaagtgagaagaggaaaatgccaagaaaacaaaggaaacaagccaagatgggtaccaaagtagtataat |
49653305 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14382115 - 14382151
Alignment:
| Q |
1 |
cttcacagtggatagaaaccttcaagaaccatgtctg |
37 |
Q |
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| T |
14382115 |
cttcacagtggatagaaactttcaagaaccatgtctg |
14382151 |
T |
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