View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_29 (Length: 260)
Name: NF17185_low_29
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 32340601 - 32340852
Alignment:
| Q |
9 |
aacagagatgcctttgtcccaaaatctgttgaagccaacatatcaccaaacacacctaactcaggacactcactccattgatcatgtccatgtaacaaaa |
108 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32340601 |
aacacagatgcctttgtcacaaaatctgttgaagccaacatatcaccaaccacacctaactcaggacactcactccattgatcatgtccatgtaacaaaa |
32340700 |
T |
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| Q |
109 |
cagattgaggatgtcccctcccaaccataactaaatcaaaataatctatcattcttcttatactagaagaaaattccattccatctttcacaacttcttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32340701 |
cagattgaggatgtcccctcccaaccataactaaatcaaaataatctatcattcttcttatactagaagaaaattctattccatctttcacaacttcttc |
32340800 |
T |
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| Q |
209 |
agttatctcaaaccttatatttccagcattgtaatatctatattcatctact |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32340801 |
agttatctcaaaccttatatttccagcattgtaatatctatattcatctact |
32340852 |
T |
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