View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_3 (Length: 543)
Name: NF17185_low_3
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 23522382 - 23522709
Alignment:
| Q |
17 |
aaggagtggggccaaaaggttgggtacgtgagagatattgatggcatcgtgatcagaatgggaaatcatgtaaagcctgcaaaattagattagttatgtg |
116 |
Q |
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| T |
23522382 |
aaggagtggggccaaaaggttgggtacgtgagagatattgatggcatcgtgatcagaatgggaaatcatgtaaagcctgcaaaattagattagttatgtg |
23522481 |
T |
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| Q |
117 |
cagttggacatagaagcagttggtaaaatacaatattatgttgatgtttatgtattctctgtataggttgaataagaaaaacatgtattttgtatatgta |
216 |
Q |
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| T |
23522482 |
cagttggacatagaagcagttggtaaaatacaatattacgttgatgtttatgtat--tctgtataggttgaataagaaaaacatgtattttgtatatgta |
23522579 |
T |
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| Q |
217 |
taagaaatacatccatataagttactaaaataaaattatcaactgcatacaacaatatgtgaattttcccagcatgcacttgctagaatgaagtttgaat |
316 |
Q |
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| T |
23522580 |
taagaaatacatccatataagttactaaaataaaattatcaactgcagacaacaatatgtgaa-tttcccagcatgcacttgccagaatgaagttggaat |
23522678 |
T |
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| Q |
317 |
tatacatgtatttgctctgctgtgttttata |
347 |
Q |
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| T |
23522679 |
tatacatgtatttgctctgctttgttttata |
23522709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 374 - 465
Target Start/End: Original strand, 23522709 - 23522798
Alignment:
| Q |
374 |
acttcattgattgttgttgcttatgacaattttggtggcaagggtggtttataaacatgcataataaatcatatgtattgaaatacaaacca |
465 |
Q |
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| T |
23522709 |
acttcattgattgttgttgcttatgacaattttggtggcaagggtggtttataaacatgcataataaatc--atgtgttgaaatacaaacca |
23522798 |
T |
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