View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_32 (Length: 249)
Name: NF17185_low_32
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8554657 - 8554891
Alignment:
| Q |
1 |
tgtaattcgggtcatggttggacttcagaatttggttctcctgacaaggaggaagaatttcattggctaatcaagtgagtttggttaaacctgtcattaa |
100 |
Q |
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| T |
8554657 |
tgtaattcaggtcatgcttggacttcagaatttggttctcctgacaaagaggaagaatttcattggctaatcaagtgagtttggttaaacctgtcattaa |
8554756 |
T |
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| Q |
101 |
atattaagttgaaactataatgttgaagactttgatgtaggggactatttgtgatgtgatgtgatatcttatgataatagt----taagttgttttaggt |
196 |
Q |
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| T |
8554757 |
atattaagttgaaactataattttgcagactttgatgtaggggactatttgtgatgtgatgtgatatcttatgataatagttaagtaagttgttttaggt |
8554856 |
T |
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| Q |
197 |
actcaccattgcataatgtccggagaccatgggag |
231 |
Q |
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| T |
8554857 |
actcaccattgcataatgtctggagaccatgggag |
8554891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 8559152 - 8559263
Alignment:
| Q |
5 |
attcgggtcatggttggacttcagaatttggttctcctgacaaggaggaagaatttcattggctaatcaagtgagtttggttaaacctgtcattaaatat |
104 |
Q |
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| T |
8559152 |
attcaggtcatgcttggacctcagattttggctgttctgacaaggaagaagaatttcattggctaatcaagtgagtttcgttaaacctatcgttaaatag |
8559251 |
T |
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| Q |
105 |
taagttgaaact |
116 |
Q |
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| T |
8559252 |
taagatgaaact |
8559263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 8559349 - 8559412
Alignment:
| Q |
166 |
atcttatgataatagttaagttgttttaggtactcaccattgcataatgtccggagaccatggga |
230 |
Q |
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| T |
8559349 |
atcttatgataatact-atggtgtttcaggtactcaccattgcataatgtccggagaccatggga |
8559412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 53739099 - 53739171
Alignment:
| Q |
10 |
ggtcatggttggacttcagaatttggttctcctgacaaggaggaagaatttcattggctaatcaagtgagttt |
82 |
Q |
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| T |
53739099 |
ggtcatgcttggacctcagattatggttgtgcagataaggaggaagagtttcattggctaatcaagtgagttt |
53739171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 53740281 - 53740321
Alignment:
| Q |
190 |
tttaggtactcaccattgcataatgtccggagaccatggga |
230 |
Q |
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| T |
53740281 |
tttaggtactcaccattgcataatgtccggcgaccttggga |
53740321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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