View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17185_low_37 (Length: 238)

Name: NF17185_low_37
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17185_low_37
NF17185_low_37
[»] chr3 (6 HSPs)
chr3 (15-187)||(37419608-37419780)
chr3 (71-174)||(53060404-53060507)
chr3 (73-185)||(53063382-53063494)
chr3 (73-174)||(53076405-53076509)
chr3 (15-69)||(53340522-53340576)
chr3 (70-111)||(53340455-53340496)
[»] chr4 (1 HSPs)
chr4 (73-174)||(34036719-34036820)
[»] chr2 (1 HSPs)
chr2 (90-145)||(6688626-6688681)
[»] chr7 (1 HSPs)
chr7 (73-155)||(31014960-31015046)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 37419608 - 37419780
Alignment:
Q  15 atgtaaacttatctttgaatgataagggtaggctaggatctatataattatatatcgtgagtcgatggtgtttgtaagacaataactctgccttattttg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37419608 atgtaaacttatctttgaatgataagggtaggctaggatctatataattatatatcgtgagtcgatggtgtttgtaagacaataactctgccttattttg 37419707  T
Q  115 ccctctatgtcgtatacgttttcaattatgtattggttttcatgcaactaaaatccattcttgctcctctcga 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37419708 ccctctatgtcgtatacgttttcaattatgtattggttttcatgcaactaaaatccattcttgctcctctcga 37419780  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 53060404 - 53060507
Alignment:
Q  71 gtgagtcgatggtgtttgtaagacaataactctgccttattttgccctctatgtcgtatacgttttcaattatgtattggttttcatgcaactaaaatcc 170  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||||||||||||    
T  53060404 gtgagtcaatggtgtttgaaagacaataactctgccttattttgtcctctatgtcgtttacattttcaattatgtattggctttcatgcaactaaaatcc 53060503  T
Q  171 attc 174  Q
    ||||    
T  53060504 attc 53060507  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 53063382 - 53063494
Alignment:
Q  73 gagtcgatggtgtttgtaagacaataactctgccttattttgccctctatgtcgtatacgttttcaattatgtattggttttcatgcaactaaaatccat 172  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||    
T  53063382 gagtcgatggtgtttcaaagacaataactctgccttattttgtcctctatgtcgtatacattttcaattatgcattggctttcatgcaattaaaatccat 53063481  T
Q  173 tcttgctcctctc 185  Q
    ||| | |||||||    
T  53063482 tctagttcctctc 53063494  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 53076405 - 53076509
Alignment:
Q  73 gagtcgatggtgtttgtaagacaataactctgccttattttgccctctatgtcgtatacgttttcaattatgtatt---ggttttcatgcaactaaaatc 169  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||||  ||| | |||||||||||||| |   || |||||||||| ||||||     
T  53076405 gagtcgatggtgtttgaaagacaataactctgccttattttttcctctatgttatatgcattttcaattatgtactggcggctttcatgcaattaaaatt 53076504  T
Q  170 cattc 174  Q
    |||||    
T  53076505 cattc 53076509  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 53340576 - 53340522
Alignment:
Q  15 atgtaaacttatctttgaatgataagggtaggctaggatctatataattatatat 69  Q
    |||||| ||||| |||||||||  |||| ||||||||||||||||||||||||||    
T  53340576 atgtaagcttatatttgaatgacgaggggaggctaggatctatataattatatat 53340522  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 53340496 - 53340455
Alignment:
Q  70 cgtgagtcgatggtgtttgtaagacaataactctgccttatt 111  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  53340496 cgtgagccgatggtgtttgaaagacaataactctgccttatt 53340455  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 34036719 - 34036820
Alignment:
Q  73 gagtcgatggtgtttgtaagacaataactctgccttattttgccctctatgtcgtatacgttttcaattatgtattggttttcatgcaactaaaatccat 172  Q
    |||||||||||||||| |||||||||||||||||||| |||  ||| |||||  ||||| |||||||||||||||||| |||||||||| ||||||||||    
T  34036719 gagtcgatggtgtttgaaagacaataactctgccttaatttttcctttatgttatatacattttcaattatgtattggctttcatgcaattaaaatccat 34036818  T
Q  173 tc 174  Q
    ||    
T  34036819 tc 34036820  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 6688626 - 6688681
Alignment:
Q  90 aagacaataactctgccttattttgccctctatgtcgtatacgttttcaattatgt 145  Q
    |||||| ||||||||||||||||   |||||||||||||||| |||||||||||||    
T  6688626 aagacagtaactctgccttatttaatcctctatgtcgtatacattttcaattatgt 6688681  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 31014960 - 31015046
Alignment:
Q  73 gagtcgatggtgtttgtaagacaataactctgcc----ttattttgccctctatgtcgtatacgttttcaattatgtattggttttc 155  Q
    |||||||||||||||| |||||||||||||||||    ||| |||  ||| |||||  ||||| |||||||||||||||||| ||||    
T  31014960 gagtcgatggtgtttgaaagacaataactctgccttaattaatttttcctttatgttatatacattttcaattatgtattggctttc 31015046  T

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