View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17185_low_39 (Length: 201)
Name: NF17185_low_39
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 44079416 - 44079586
Alignment:
| Q |
23 |
gccaccacatcatcacccttacacatgtacatttttctctccaaatcacaaccatcaacacaagtccttggacatgtggcatcatctaagaactcctcct |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44079416 |
gccaccacatcatcacccttacacatgtacatttttctctccaaatcacaaccatcaacacaagtccttggacatgtggcatcatctaagaactcctcct |
44079515 |
T |
|
| Q |
123 |
cgaccggaccccaccgccacgtggctacaccgaactcctctgcactacgttcaaatcgcctttgcttctcc |
193 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
44079516 |
cgactggaccccaccgccacgtggctacaccaaactcctctgcactacgttcaaatcgcccttgcatctcc |
44079586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 44074476 - 44074646
Alignment:
| Q |
23 |
gccaccacatcatcacccttacacatgtacatttttctctccaaatcacaaccatcaacacaagtccttggacatgtggcatcatctaagaactcctcct |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| || |||||||| | |
|
|
| T |
44074476 |
gccaccacatcatcacccatacacatgtacattcttctatccaattcacaaccatccacacaagtccttggacaagtggcatcatccaaaaactcctctt |
44074575 |
T |
|
| Q |
123 |
cgaccggaccccaccgccacgtggctacaccgaactcctctgcactacgttcaaatcgcctttgcttctcc |
193 |
Q |
| |
|
| |||||| |||||| ||| |||||||| | |||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
44074576 |
caaccggatcccaccaccatgtggctacgtcaaactcctccgcactacgttcaaatcgcccttgcatctcc |
44074646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University