View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17185_low_4 (Length: 534)
Name: NF17185_low_4
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 14395753 - 14395248
Alignment:
| Q |
1 |
gattgtacaaataaattttaaagtgtgtgtaaatcattaagttttaggtttgatttgttcccaccagtttatgtaaatcggatgcaaatggaaaaaccga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| | |||||| |||| |||||||||||| |||| || ||||||||| ||||||||||| |||||| ||| |
|
|
| T |
14395753 |
gattgtacaaataaattttaaagtacatgtagaacattaaattttcggtttgatttgtccccatcaagttatgtaaaccggatgcaaatagaaaaatcga |
14395654 |
T |
|
| Q |
101 |
agaatctccttttaaatattttagaatccttacatgtaataatttggcggatttgaacgcaaccggtgctagtttatgttttgaatgtaatttgttttga |
200 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14395653 |
agaatctccttctaaatattttagaacccttacatgcaataatttggcggatttgaaagcaaccggtgctagtttatgttttgaatgtaatttgttttga |
14395554 |
T |
|
| Q |
201 |
aaataaaatcaaaacgtcacggactacctcataatgaatactcaaaccattaaaccactgggccaaacaagtccttatgatgttaagaggttcttaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14395553 |
aaataaaatcaaaacgtcacggactacctcataatgaatactcaaatcattaaaccactaggccaaacaagtccttatgatgttaagaggttcttaattc |
14395454 |
T |
|
| Q |
301 |
ttttaaatcatcgcaactttcaaaatatattttgcaaattgttccaacaagacctaaataaataaaagaatttgatcattgcgaatcttacaaaactgca |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14395453 |
ttttaaatcagcgcaactttcaaaatatattttgcaaattgttccaac-----------aaataaaagaatttgatcattgcgaatcttacaaaactgca |
14395365 |
T |
|
| Q |
401 |
tgtcaaaatggtcaattttaaaataattacaaaccattttattctctattaggaacaaatttgtccaatatttgaatttctttaagatcgaatcagtagt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14395364 |
tgtcaaaatggtcaattttaaaataattacaaaccattttattctctattaggaacaaatttgtccaatatttgagtttctttaagatcgaatcagtagt |
14395265 |
T |
|
| Q |
501 |
attaatttagatattta |
517 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14395264 |
attaatttagatattta |
14395248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University