View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_5 (Length: 519)
Name: NF17185_low_5
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 225 - 409
Target Start/End: Original strand, 6993218 - 6993402
Alignment:
| Q |
225 |
tcctaagtctcgattaaggcaaagttagggggcaaaaaa--ttacttttgcttgcaagtcaagaaaagagagttgctgccaaagttttgccccgaaattt |
322 |
Q |
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| T |
6993218 |
tcctaagtctggattaaggcaaagttacggggcaaaaaaaattacttttgcttgcaagtcaaaaaaagag--ttgctgccaaagttttgccccgaaattt |
6993315 |
T |
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| Q |
323 |
cttatcaaaaataatatttgctgcaaaaacatgagtttcatgtaggacggtccatgaaattgactctagaaattttgatattctttt |
409 |
Q |
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| T |
6993316 |
cttatcaaaaataatatttgctgcaaaaacatgagtttcatgtaggacggtccatgaaattgactctagaaattttgatattctttt |
6993402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 390 - 517
Target Start/End: Original strand, 6993412 - 6993539
Alignment:
| Q |
390 |
agaaattttgatattcttttctttctagatgtatagattctaattaagcatcctttggtaacattgaacatctcctctattttggttagagtatgcagtt |
489 |
Q |
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| T |
6993412 |
agaaattttgatattcttttctttctagatgtatagattctaattaagcatcctttggtaacattgaacatctcctctattttggttagagtatgcagtt |
6993511 |
T |
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| Q |
490 |
acctagttttgaccagtagcctatgctt |
517 |
Q |
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| T |
6993512 |
acctagttttgaccagtagcctatgctt |
6993539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 6992938 - 6993058
Alignment:
| Q |
22 |
ggtttaattactcgtctatgcgacgttgatcccacattctgaattgcaaaatgttagagctaaatattgttatttaaataacttttttccacaagaattg |
121 |
Q |
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| T |
6992938 |
ggtttaattactcgtctatgcgacgttgatcccacattctgaattgcaaaatgttagagctaaatattgttatttaaataacttttttccacaagaattg |
6993037 |
T |
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| Q |
122 |
gtcattgacacacaagcatca |
142 |
Q |
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| T |
6993038 |
gtcattgacacacaagcatca |
6993058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 6993107 - 6993186
Alignment:
| Q |
149 |
ttactcccttaggttagtattataagcaagacaaggtctttaaattttgatcaccattataagtaaaatcaattattcct |
228 |
Q |
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| T |
6993107 |
ttactcccttaggttagtattataagcaagacaaggtctttaaattttcatcaccattataagtaaaatcaattattcct |
6993186 |
T |
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