View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17185_low_7 (Length: 478)
Name: NF17185_low_7
Description: NF17185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17185_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 48968722 - 48968978
Alignment:
| Q |
15 |
aaaatttcatatggaattcaaaattagaataatataagtcatgggaatagagatatccccaaagatattcttgtttgcatttcatattgttcatcaaata |
114 |
Q |
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| T |
48968722 |
aaaatttcatatggaattcaaaattagaataatataagtcatgggaatagagatatccccaaagatattcttgtttgcattttatattgttcatcaaata |
48968821 |
T |
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| Q |
115 |
ccaccttgaggtgatgggttctcgtttaagaaggaacgccagttcaagaatcatttttctaaataaaggacggtttgtttgaccaaatttgtaacactcc |
214 |
Q |
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| T |
48968822 |
ccaccttgaggtgatgggttctcgtttaagaaggaacgccagtttaaaaatcatttttctaaataaaggacggttcgtttgaccaaatttgtaacactcc |
48968921 |
T |
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| Q |
215 |
tcggttaacaaattcttaatcaactaaaattaaacactcattagcttttgattcaaa |
271 |
Q |
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| T |
48968922 |
tcggttaacaaattcttaatcaactaaaattaaacactcattagcttttgattcaaa |
48968978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 320 - 465
Target Start/End: Original strand, 48969009 - 48969149
Alignment:
| Q |
320 |
gaggtagggggaatgtacttgtagtacattacattgaatcagagtttaattttaatttagaatttgnnnnnnnnnncttccggaatttttagaatttact |
419 |
Q |
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| T |
48969009 |
gaggtagggggaatgtacttgtagtacatt-----gaatcagagtttaattttaatttagaatttgttttttttttcttccggaatttttagaatttact |
48969103 |
T |
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| Q |
420 |
atttatcgtataatgtgcgaaaacgtttacacatccaatgtatttc |
465 |
Q |
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| T |
48969104 |
atttatcgtataatgtgcgaaaacgtttacacctccaatgtatttc |
48969149 |
T |
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