View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17186_high_7 (Length: 287)
Name: NF17186_high_7
Description: NF17186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17186_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 21489374 - 21489110
Alignment:
| Q |
7 |
tagattatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataat |
106 |
Q |
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| T |
21489374 |
tagattatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggatgatattactgagttaacatcaattccaatatgtgcataat |
21489275 |
T |
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| Q |
107 |
tgggatcaaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccac |
206 |
Q |
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| T |
21489274 |
tgggatcaaacactaacttattggcatgactatcaaactcgacaccaacaaattgattgaaagcatttttcccatcaactactccgagttttgaacccac |
21489175 |
T |
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| Q |
207 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggcttgtttat |
271 |
Q |
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| T |
21489174 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagatgagtccatcggcttgtttat |
21489110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 21483026 - 21482777
Alignment:
| Q |
10 |
attatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataattgg |
109 |
Q |
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| T |
21483026 |
attatacttactttgactaatgacccactcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatacttgg |
21482927 |
T |
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| Q |
110 |
gatcaaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccacaga |
209 |
Q |
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| T |
21482926 |
gatcatac------tgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgaacctccaga |
21482833 |
T |
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| Q |
210 |
gttgtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggctt |
265 |
Q |
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| T |
21482832 |
gttgggaggaatgacggtatcttgtggtgcaagaaagaagatgactccatcggctt |
21482777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 21493181 - 21492930
Alignment:
| Q |
7 |
tagattatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataat |
106 |
Q |
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| T |
21493181 |
tagattatatttactttgactaatgacccacttaccttattccatgttgttgtcctgcgggaaattaaagagttaacatcaattccaatatgtggatact |
21493082 |
T |
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| Q |
107 |
tgggatcaaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccac |
206 |
Q |
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| T |
21493081 |
tgggatcatac------tgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcacatcaactactccgagatatttacctcc |
21492988 |
T |
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| Q |
207 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggct |
264 |
Q |
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| T |
21492987 |
agagttgggaggaatgacggtgtcatgtgatgcaagaaagaagatgattccatcggct |
21492930 |
T |
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