View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17186_low_1 (Length: 768)
Name: NF17186_low_1
Description: NF17186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17186_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 45239835 - 45240170
Alignment:
| Q |
11 |
cagagatatgaatacgatttagttgatgattttagcactcttttagttttagatgaaagttcactataatgtataaaattgaaattattgatgagaaaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
45239835 |
cagagatatgaatacgatttagttgatgattttagcactcttttagttttagatgaaagttcgctataatgtatcaaattcaaattattgatgagaaaaa |
45239934 |
T |
|
| Q |
111 |
tattggttaagatcataatagttaagatcatattagcctaactctgaagcagctttgtaaataaattgattcccttcaactgaaagaaagtagatgatac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45239935 |
tattggttaagatcataatagttaagatcatattagcctaactctgaagcagctttgtaaataaattgattcccttcaactgaaagaaagtagatgatac |
45240034 |
T |
|
| Q |
211 |
tattaatcagaaatcacagcaaaatcatacaactattttagttacatctaaaatctgcaccatttagtcc-tagcttatcacattacatattcattttca |
309 |
Q |
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| T |
45240035 |
tattaatcagaaatcacaacaaaatcatacaactattttagttacatctaaaatctgcaccatttagtccttagcttatcacattacatattcattttca |
45240134 |
T |
|
| Q |
310 |
agtaataaattgctaaagaagttgaaccatatatga |
345 |
Q |
| |
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| T |
45240135 |
agtaataaattgctaaagaagttgaaccatatatga |
45240170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 343 - 657
Target Start/End: Original strand, 45240200 - 45240514
Alignment:
| Q |
343 |
tgagtatggagtatgattaaaaacacccttccacaaaatctcacataatagaccagagaaagaataccgttcagtcctttcaactcaaccacacggttta |
442 |
Q |
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| T |
45240200 |
tgagtatgaagtatgattaaaaacacccttccacaaaatctcacataatagaccagagaaagaataccgttcagtcctttcaactcaaccacacggttta |
45240299 |
T |
|
| Q |
443 |
atggatgatatactactttcctcccttaatatatacgaccatgttgccaaattacaaaaattaagaaaactgatgataaggtatgatcatttttcttctt |
542 |
Q |
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| T |
45240300 |
atggatgatatactactttcctcccttaatatatacgaccatgttaccaaattacaaaaattaagaaaactgatgataaggtatgatcatttttcttctt |
45240399 |
T |
|
| Q |
543 |
caaaaataatatatgaccannnnnnnnnnnncttaaaaataaagaatgaaataatagatgataatgttaccaaattacacgtgagagcgaatgaaatctc |
642 |
Q |
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| T |
45240400 |
caaaaataatatatgaccattttttatttttcttaaaaataaagaatgaaataatagatgataatgttaccaaattacacgtgagagcgaatgaaatctc |
45240499 |
T |
|
| Q |
643 |
taattaggtttcgaa |
657 |
Q |
| |
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||||||||||||||| |
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| T |
45240500 |
taattaggtttcgaa |
45240514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 389 - 553
Target Start/End: Original strand, 45233666 - 45233828
Alignment:
| Q |
389 |
aatagaccagagaaagaataccgttcagtcctttcaactcaaccacacggtttaatggatgatatactactttcctcccttaatatatacgaccatgttg |
488 |
Q |
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||||||||| ||||||||||| |||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45233666 |
aatagaccaaagaaagaatacggttcagtcctctcaactcaaccac--ggttgaatggatgataaactactttcctcccttaatatatacgaccatgtta |
45233763 |
T |
|
| Q |
489 |
ccaaattacaaaaattaagaaaactgatgataaggtatgatcatttttcttcttcaaaaataata |
553 |
Q |
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| T |
45233764 |
ccaaattacaagaattaagaaaactgatgataatatatgatcatttttcttcttcaaaaataata |
45233828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 157 - 385
Target Start/End: Original strand, 45232710 - 45232946
Alignment:
| Q |
157 |
aagcagctttgtaaataaattgattcccttcaactgaaagaaagtagatgatactattaatcagaaatcacagcaaaatcatacaactattttagttaca |
256 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||| | | || |||| |
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| T |
45232710 |
aagcagctttgtaaatgaattgattcccttcaacagaaagaaagtagatggtactattaatcagacatcacagcaagatcatgctagaat----cataca |
45232805 |
T |
|
| Q |
257 |
tctaaaatctgcaccatttagtcc-tagc-------ttatcacattacatattcattttcaagtaataaattgctaaagaagttgaaccatat----atg |
344 |
Q |
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|||||||||||||||||||||||| |||| || || |||||||||||| |||||||||||| ||||||||||||||||||| ||||| ||| |
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| T |
45232806 |
tctaaaatctgcaccatttagtccttagcttgtcggttgtcgcattacatattcgttttcaagtaatgaattgctaaagaagttgaatcatatatgaatg |
45232905 |
T |
|
| Q |
345 |
agtatggagtatgattaaaaacacccttccacaaaatctca |
385 |
Q |
| |
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| | ||||||||||||||||||||||||| ||| ||||||| |
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| T |
45232906 |
actgtggagtatgattaaaaacacccttcaacagaatctca |
45232946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 641
Target Start/End: Original strand, 45233835 - 45233876
Alignment:
| Q |
600 |
atgataatgttaccaaattacacgtgagagcgaatgaaatct |
641 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
45233835 |
atgataatgttaccaaattacaggtgaaagcaaatgaaatct |
45233876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 7832687 - 7832798
Alignment:
| Q |
11 |
cagagatatgaatacgatttagttgatgattttag-cactcttttagttttagatgaaagttcactataatgtataaaattgaaattattgatgagaaaa |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
7832687 |
cagagatatgaatacgatttagttgatgattttagtcactctttt------agatgaaagttcactgtaatgtatcaaattaaaattattgatgagaaaa |
7832780 |
T |
|
| Q |
110 |
atattggttaagatcata |
127 |
Q |
| |
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||||||||||| |||||| |
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| T |
7832781 |
atattggttaaaatcata |
7832798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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