View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17186_low_10 (Length: 239)
Name: NF17186_low_10
Description: NF17186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17186_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 42341590 - 42341378
Alignment:
| Q |
19 |
cagttgagcttattattagatttagagttgaaggtggaacaagaagaaggtgaagaagacattgaaacatgggaaaacatggaacatgaaggagacattc |
118 |
Q |
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| T |
42341590 |
cagttgagcttattattagatttagagttgaaggtggaacaagaagaaggtgaagaagacattgaaacatgggaaaacatggaacatgaaggaggcattc |
42341491 |
T |
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| Q |
119 |
gggcgtgacatctcaaccagctgcagttcgtagagattccaaggccaaatgacatcatcattttgcttcttctgcaactttcctaaattcttttatttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42341490 |
gggcgtgacatctcaaccagctgcagttcgtagagattccaaggccaaatgacatcatcattttgcttcttctgcaactttcctaaattcttttatttta |
42341391 |
T |
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| Q |
219 |
tccctttgcttct |
231 |
Q |
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| T |
42341390 |
tccgtttgcttct |
42341378 |
T |
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