View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17186_low_3 (Length: 628)
Name: NF17186_low_3
Description: NF17186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17186_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 185 - 613
Target Start/End: Original strand, 23389735 - 23390151
Alignment:
| Q |
185 |
tccatcatacgctggaaactttaatgtgattaaagcttaattggttagttatataatatctttccatgattgactatatactcctcctatttcaaatata |
284 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
23389735 |
tccatcatacgctggaaacgttaatgtgattaaagcttaattggttagttatataata--------------actatataatcttcctatttcaaatata |
23389820 |
T |
|
| Q |
285 |
cttttacctatcaccccatgtatagcttaatgtgtcgcacataacaataaatctattctattctctaacctcttgtgtttcacatagtta--ggtaataa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
23389821 |
cttttacctatcaccccatgtatagcttaatgtgtcgcacataacaataaatctattctattctctaacctcttgtgtttcacacagttatagctaatag |
23389920 |
T |
|
| Q |
383 |
aatgaaattatatttttatagtgtgtgtgattgaatacctagcttataaatggttgtttaatgttgaaagataaaatacacccagttgatccccaattaa |
482 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
23389921 |
aatgaaattatatttttatagactgtgtgattgaaaacctagcttataaatggttgtttaatgttggaagatagaatacacccagttgatccccaattaa |
23390020 |
T |
|
| Q |
483 |
gaatacacccacttaattacaatagctgccacttctttcatcgcaatttcgtttgaagctatcttcatgatttcatctgaagagaatgggaagatttttc |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23390021 |
gaatacacccacttaattacaatagctgccacttctttcatcgcaatttcgtttgaagctatcttcatgatttcatctaaagagaatgggaagatttttc |
23390120 |
T |
|
| Q |
583 |
actttcaatcacattaattcttccatgatag |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23390121 |
actttcaatcacattaattcttccatgatag |
23390151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 505 - 556
Target Start/End: Complemental strand, 25003927 - 25003876
Alignment:
| Q |
505 |
tagctgccacttctttcatcgcaatttcgtttgaagctatcttcatgatttc |
556 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
25003927 |
tagctgccacttctttcatcgaaatttagtttgaagctatcttcatgatttc |
25003876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University