View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17187_high_12 (Length: 246)
Name: NF17187_high_12
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 47231444 - 47231677
Alignment:
| Q |
12 |
atgaagtggcaattaggaatcaggtattgtcaaattaaatnnnnnnnngttggaatccggtatatgcagcattcaggtttgtgaaattctgagttattta |
111 |
Q |
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| T |
47231444 |
atgaagtggcaattaggaatcaggtattgtcaaattaaataaaaaaaacttggaatccggtatatgcagcattcaggtttgtcaaattctgagttattta |
47231543 |
T |
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| Q |
112 |
tgacaagaaaacgcatcccatactagtactttactattattacacatnnnnnnngtacgacagagtaaatattccttggttcggcaataaatcatattga |
211 |
Q |
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| T |
47231544 |
tgacaagaaaacgcatcccatactagtactttactattattacacat-aaaaaagtacgacaaagtaaatattccttggttcgggaataaatcatattga |
47231642 |
T |
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| Q |
212 |
attgattaacagaaaagaataagaaaacgcatatc |
246 |
Q |
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| T |
47231643 |
attgattaacagaaaagaataagaaaacgcatatc |
47231677 |
T |
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