View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17187_high_14 (Length: 222)
Name: NF17187_high_14
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_high_14 |
 | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0137 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 4039 - 4201
Alignment:
| Q |
20 |
atgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4039 |
atgcccaaaaacaccccaaccaaacctaaagaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaa |
4138 |
T |
|
| Q |
120 |
tcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgactaaaa |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4139 |
tcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgactaaaa |
4201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 3896374 - 3896536
Alignment:
| Q |
20 |
atgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896374 |
atgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaa |
3896473 |
T |
|
| Q |
120 |
tcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgactaaaa |
182 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
3896474 |
tcaaaagcaaaatggacctaatgagggtgattcttaaataatacttatatggaatgactaaaa |
3896536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University