View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17187_high_5 (Length: 384)
Name: NF17187_high_5
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_high_5 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 64196 - 64564
Alignment:
| Q |
13 |
tatattacattcaacttgtctgcaagaaacattaattaagatttaaatccaaatttccatcaaagagagattcttatattcataatctagttgcaggatc |
112 |
Q |
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| T |
64196 |
tatattacattcaacttgtctgcaagaaacattaattaagatttaaatccaaatttccatcaaagagagattcttatattcataatctagttgtaggatc |
64295 |
T |
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| Q |
113 |
aaacccagttgggtttcaagttacattgacaaattgtcgagaagatctgatgatggtctagaacaagatttacaggttactacttttgctggttttctta |
212 |
Q |
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| T |
64296 |
aaacccagttgggtttcaagttacattgacaaattgtcgagaagatctgatgatggtctagaacaagatttacaggttactacttttgctggttttctta |
64395 |
T |
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| Q |
213 |
ttttacgtcaatctttaaactatggctatcttaacaattcagttatttactaaatcaaactttatgacctacgat---------tactgatttaaagatt |
303 |
Q |
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| T |
64396 |
ttttacgtcaatctttaaactatggctatcttaacaattcagttatttactagatcaaactttatgacctatgattggtctatctactgatttaaagatt |
64495 |
T |
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| Q |
304 |
cttcacctatcaacctttcagatcgtctaaaccaagtgcttcgatgggctttaggttctgttgaggttc |
372 |
Q |
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| T |
64496 |
ctgcacctatcaatctttcagatcgtctaaaccaagtgcttcgatgggctttaggttctgttgaggttc |
64564 |
T |
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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 367
Target Start/End: Complemental strand, 13823898 - 13823824
Alignment:
| Q |
293 |
atttaaagattcttcacctatcaacctttcagatcgtctaaaccaagtgcttcgatgggctttaggttctgttga |
367 |
Q |
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| T |
13823898 |
atttaaaggttctgcacccatcaatctttctgatcgtctaaaccaagtgcttcgatgggctttaggttctgttga |
13823824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 38719082 - 38719021
Alignment:
| Q |
307 |
cacctatcaacctttcagatcgtctaaaccaagtgcttcgatgggctttaggttctgttgag |
368 |
Q |
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| T |
38719082 |
cacccatcaatctttcagatcgtctacaccaagttcttcgttgggctcttggttctgttgag |
38719021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 24301371 - 24301318
Alignment:
| Q |
181 |
tttacaggttacta-cttttgctggttttcttattttacgtcaatctttaaact |
233 |
Q |
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| T |
24301371 |
tttacaggttcctagcttttgctggttttctttttttacttcaatcttcaaact |
24301318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 367
Target Start/End: Complemental strand, 43434252 - 43434178
Alignment:
| Q |
293 |
atttaaagattcttcacctatcaacctttcagatcgtctaaaccaagtgcttcgatgggctttaggttctgttga |
367 |
Q |
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| T |
43434252 |
atttaaaggttctgcacctatcaatctttcagatcggctaaaccaagtgcttcggtgggctttaggttctgttga |
43434178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 24787812 - 24787899
Alignment:
| Q |
152 |
agaagatctgatgatggtctagaacaagatttacaggttactacttttgctggttttc--ttattttacgtcaatctttaaactatgg |
237 |
Q |
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| T |
24787812 |
agaagatcagatgatggtccagaacagtgtttacaggttcctagctttgctggttttcttttattttccctcaatctttaaactatgg |
24787899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 9481916 - 9481968
Alignment:
| Q |
309 |
cctatcaacctttcagatcgtctaaaccaagtgcttcgatgggctttaggttc |
361 |
Q |
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| T |
9481916 |
cctatcaatctttccgatcgtttgaaccaagtgcttcgatgggctttaggttc |
9481968 |
T |
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