View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17187_high_6 (Length: 341)
Name: NF17187_high_6
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 18030067 - 18029753
Alignment:
| Q |
7 |
aaaatttggtttaataattgaaggacaaatttgatgagagaatgatatttgggactaaattgaaagtttattcaaatctaaaacaagcattaaagtttgg |
106 |
Q |
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| T |
18030067 |
aaaagttggtttgataattaaaggactaaattgatgagagaatgatatttgggactaaattgaaagtttattcaaatctaaaacaagcattaaagtttgg |
18029968 |
T |
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| Q |
107 |
aaataaaacggggacgaaattttctcattttcacgtaggaatctatgatcaa-ccttattgaatagtttagaattaaaagtacaatattgtgactagaaa |
205 |
Q |
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| T |
18029967 |
aaataaaacggggacgaaattttctcattttcacgtaggaatctatgatcaaaccttattgaatagtttagaattaaaagtacaatattgtgactagaaa |
18029868 |
T |
|
| Q |
206 |
atcaaaatacaaattaaaccatgttctctttaacaaaataaattatcttaaaatttggggaattgaatttgttcaccacatctactccttggaagcaaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18029867 |
atcaaaatacaaattaaaccatgttctctttaacaaaataaattctcttaaaatttggggaattgaatttgttcaccacatctactccttggaagcaaag |
18029768 |
T |
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| Q |
306 |
gacactcaatgaaat |
320 |
Q |
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| T |
18029767 |
gacactcaatgaaat |
18029753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 18035888 - 18035826
Alignment:
| Q |
208 |
caaaatacaaattaaaccatgttctctttaacaaaataaattatcttaaaatttggggaattg |
270 |
Q |
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|||||||||||| |||||||||||| ||||||||| ||||| |||||||| ||||||||||| |
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| T |
18035888 |
caaaatacaaatcaaaccatgttctacttaacaaaacaaattctcttaaaacttggggaattg |
18035826 |
T |
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