View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17187_high_8 (Length: 270)
Name: NF17187_high_8
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_high_8 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 70 - 270
Target Start/End: Original strand, 12642175 - 12642375
Alignment:
| Q |
70 |
tgttgttagatacattgttaaattcttgttcataatcccatattactacttacatatgtgaatgcgcattaatttaaagagagtaacatcatgtagctat |
169 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12642175 |
tgttattagatacattgttaaattcttgttcataatcccatattactacttacatatgtgaatgcgcattaatttaaagagagtaacatcatgtagctat |
12642274 |
T |
|
| Q |
170 |
ttataatctttaacacaccatccaataacgtatcattgcatcaattgagacttctcagatttatttcttttgtatattcgttcacatactgattcatatg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12642275 |
ttataatctttaacacaccatccaataacgtatcattgcatcaattgagacttctcagatttatttcttatgtatattcgttcacatactgattcatatg |
12642374 |
T |
|
| Q |
270 |
t |
270 |
Q |
| |
|
| |
|
|
| T |
12642375 |
t |
12642375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 12641925 - 12641983
Alignment:
| Q |
10 |
ataatactcttccataacatatctcctaaactcttcatattaccactcaatatgttttt |
68 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12641925 |
ataatactcttccataatatatctcctaaactcttcatattaccactcaatatgttttt |
12641983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University