View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17187_low_1 (Length: 850)
Name: NF17187_low_1
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_low_1 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 773; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 20 - 847
Target Start/End: Complemental strand, 23180785 - 23179949
Alignment:
| Q |
20 |
atttgaccaagaaaaacatgcttgggaaagttcttgcatgtaagtttattattaatgcacacaacatacatatattactttatctacaagcattgcaaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23180785 |
atttgaccaagaaaaacatgcttgggaaagttcttgcatgtaagtttattattaatgcacgcaacatacatatattactttatctacaagcattgcaaat |
23180686 |
T |
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| Q |
120 |
ttatataaattaacaaactttactttcagatatatacaccattgagtttcaaaagaggggattgccacatgcacacatacttatatttctacatccatct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180685 |
ttatataaattaacaaactttactttcagatatatacaccattgagtttcaaaagaggggattgccacatgcacacatacttatatttctacatccatct |
23180586 |
T |
|
| Q |
220 |
aataagctccccgttcctggtgttattgacaagatcatttcagcagagatacccaatcaggaacatgagaaagagttgtataatttggttaaaaatcata |
319 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180585 |
aataagctccccactcctggtgttattgacaagatcatttcagcagagatacccaatcaggaacatgagaaagagttgtataatttggttaaaaatcata |
23180486 |
T |
|
| Q |
320 |
tgatccatggtccatgtggtttatc---------atcaccttgcatgaaagatggaaaatgcacaaaatactaccctaagacgtatcagaactcaacaat |
410 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
23180485 |
tgatccatggtccatgtggtttatctcataaatcatcaccttgcatgaaagatggaaaatgcacaaagtactaccctaagaagtatcagaactcaacaat |
23180386 |
T |
|
| Q |
411 |
tgttgacaaagaaggttatccagtgtatagacgaagagacaatggtaacacaattgtcaagaatggtgtttcactcaataacaaacatattgtaccatat |
510 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23180385 |
tgttgacaaagaaggttatccggtgtacagacgaagagacaatggtaacacaattgtcaagaacggtgtttcactcaataacaaacatattgtaccatat |
23180286 |
T |
|
| Q |
511 |
aaccctacgttgctaatgaagtaccaagcacatatcaatgtggaatggtgtagcaaaagtgcatcgattaagtacttattcaagcacataaataaaggtt |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180285 |
aaccctacgttgctaatgaagtaccaagcacatatcaatgtggaatggtgtagcaaaagtgcatcgattaagtacttattcaagcacataaataaaggtt |
23180186 |
T |
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| Q |
611 |
atggtaggataacagccgttgttgatccaacacaagacagagattcaactcaaagtggtaacattgatgagatcaaacaatactttgattgtaggtatgt |
710 |
Q |
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| T |
23180185 |
atggtaggataacagccgttgttgatccaacacaagacagagattcaactcaaagtggtaacattgatgagatcaaacaatactttgattgtaggtatgt |
23180086 |
T |
|
| Q |
711 |
atcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcagttgaaaggttgttctttcatattccaggcgaacaaccg |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23180085 |
atcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcagttgaaaggttgttctttcatattccaggcgaacaaccg |
23179986 |
T |
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| Q |
811 |
gtttactttaacgattatgagcatattgatgatgtcc |
847 |
Q |
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| T |
23179985 |
gtttactttaacgattatgagcatattgatgatgtcc |
23179949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 673 - 792
Target Start/End: Complemental strand, 116511 - 116392
Alignment:
| Q |
673 |
attgatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcag |
772 |
Q |
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|||||||||||||| ||||| || |||||||||||| | || ||| |||||||| |||||||||| || || |||||||| |||||| | |||||||| | |
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| T |
116511 |
attgatgagatcaagcaatatttagattgtaggtatatttctccaagtgaagcaagttggagaatgttctcttttccaattcatggtagaaagccagcgg |
116412 |
T |
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| Q |
773 |
ttgaaaggttgttctttcat |
792 |
Q |
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| ||| | ||||||||||| |
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| T |
116411 |
tcgaacgtatgttctttcat |
116392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 676 - 794
Target Start/End: Complemental strand, 151624 - 151506
Alignment:
| Q |
676 |
gatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcagttg |
775 |
Q |
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||||| |||||||||||| |||||||||||||| | || ||| ||||||| ||||||||||||| || || ||||| || || || || || ||||||| |
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| T |
151624 |
gatgaaatcaaacaataccttgattgtaggtatatttctccaagtgaagcgtgttggagaatttactctttcccaattcacggccgtaaacctgcagttg |
151525 |
T |
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| Q |
776 |
aaaggttgttctttcatat |
794 |
Q |
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|| || ||||||||||||| |
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| T |
151524 |
aacggatgttctttcatat |
151506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 676 - 794
Target Start/End: Complemental strand, 18060604 - 18060486
Alignment:
| Q |
676 |
gatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcagttg |
775 |
Q |
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||||| |||||||||||| |||||||||||||| | || ||| ||||||| ||||||||||||| || || ||||| || || || || || ||||||| |
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| T |
18060604 |
gatgaaatcaaacaataccttgattgtaggtatatttctccaagtgaagcgtgttggagaatttactctttcccaattcacggccgtaaacctgcagttg |
18060505 |
T |
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| Q |
776 |
aaaggttgttctttcatat |
794 |
Q |
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|| || ||||||||||||| |
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| T |
18060504 |
aacggatgttctttcatat |
18060486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 703 - 759
Target Start/End: Complemental strand, 22065490 - 22065434
Alignment:
| Q |
703 |
aggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggt |
759 |
Q |
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|||||||| || ||| |||||||| |||||||||| |||||||||||||| |||||| |
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| T |
22065490 |
aggtatgtttctccaagtgaagcaagttggagaatgttttcatttccaattcatggt |
22065434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 674 - 738
Target Start/End: Complemental strand, 22072406 - 22072342
Alignment:
| Q |
674 |
ttgatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaatt |
738 |
Q |
| |
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||||||| || ||||||||||| |||||||||||| |||||||| |||| ||||||||||||||| |
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| T |
22072406 |
ttgatgaaataaaacaatacttggattgtaggtatatatcaccaagtgaggcatgttggagaatt |
22072342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 674 - 792
Target Start/End: Complemental strand, 124995 - 124877
Alignment:
| Q |
674 |
ttgatgagatcaaacaatactttgattgtaggtatgtatcaccaggtgaagcatgttggagaattttttcatttccaatacatggtcggaagccagcagt |
773 |
Q |
| |
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||||||| |||||||| ||| || ||||||| ||||| |||||| |||| |||||||||||||| ||||| || | ||||||||||| || ||||| || |
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| T |
124995 |
ttgatgaaatcaaacagtacatttattgtagatatgtttcaccaagtgaggcatgttggagaatattttctttctccatacatggtcgtaaaccagctgt |
124896 |
T |
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| Q |
774 |
tgaaaggttgttctttcat |
792 |
Q |
| |
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||| | ||||||||||| |
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| T |
124895 |
tgagcgcatgttctttcat |
124877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 15497863 - 15497820
Alignment:
| Q |
154 |
tacaccattgagtttcaaaagaggggattgccacatgcacacat |
197 |
Q |
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||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
15497863 |
tacactattgagtttcaaaagcgaggattgccacatgcacacat |
15497820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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