View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17187_low_2 (Length: 573)
Name: NF17187_low_2
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 492
Target Start/End: Original strand, 38555587 - 38556060
Alignment:
| Q |
16 |
atataaactcaatatttatagccaaaaactatgactattatccgaacaatgtgtcctacagtgagtaatccttactcggctatctttgcgggtaatttat |
115 |
Q |
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| T |
38555587 |
atataaactcaatatttatagccaaaaactatggctattatccgaacaa---gtcctacagtgagtagtccttacccggctatctttgcgggtaatttgt |
38555683 |
T |
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| Q |
116 |
gaatattccttgctcttgggattgtgatgccccatgttcgactcccattttctccttcatgacatgatccattgaccacatccttagtgcacgattccat |
215 |
Q |
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| T |
38555684 |
gaatattccttgctcttgggattgtgataccccatgttcgactcccattttctccttcacgacatgattcattgacaacatccttggtgcacgattccat |
38555783 |
T |
|
| Q |
216 |
gataattatgtctctttcatcatccctcttgatggttagtggtgctacaaacatggaacataagttttgtgcaccattgtccagtctccactatattttg |
315 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |
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| T |
38555784 |
gataatcatgtctctttcctcatccctcttgatggttagtggtgctacaaacatggaacatgagttttgtgcatcattgtccaatctccactatattttg |
38555883 |
T |
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| Q |
316 |
actcagtatgaggtctccacgaccaacgtactgcgttagtggtattgacaaagaatcaactcccctctcttagctattatagtctcgcctataacttttg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38555884 |
actcagtatgaggtctccacgaccaacgtactgcgttagtggcattgacaaagaatcaactcccctctcttagctattatagtctcgcctataactttcg |
38555983 |
T |
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| Q |
416 |
attgcataagaagtcttatcacctaaaagtacactcgtctatctaccaaggtcaacttacaaaataattatttttag |
492 |
Q |
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| T |
38555984 |
atcgcataagaagtcttatcacctcaaagtacactcatctatctaccaaggtcaacttacaaaataattatttttag |
38556060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 488 - 573
Target Start/End: Original strand, 38556118 - 38556203
Alignment:
| Q |
488 |
tttagttgctctttgtccaatatatatgatgattcatccaggtgtgatatactccccagaacttccaagaatatgatccatataat |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38556118 |
tttagttgctctttgtccaatatatatgatgattcatccaagtgtgatatactccccagaacttccaagaatatgatccatataat |
38556203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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