View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17187_low_3 (Length: 526)
Name: NF17187_low_3
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 508
Target Start/End: Original strand, 25813185 - 25813682
Alignment:
| Q |
8 |
attatactgaaattttttaagacttaccgacgaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattgttgtaaataaaatc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813185 |
attatactgaaattttttaagacttaccgacgaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattgttgtaaataaaatc |
25813284 |
T |
|
| Q |
108 |
aatgttctgttgagcagacatgttttcaaacgaatcatcgaagatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagaggaaac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813285 |
aatgttctgttgagcagacatgttttcaaacgaatcatcaaagatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagaggaaag |
25813384 |
T |
|
| Q |
208 |
agttccttgggttctgagggtcctagcctatttgacataaccacataggtagtggtggagtgtttacacaccgcgtcgtaaccagccttgtagtacttgt |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25813385 |
agttccttgggttctgagggtcctagcctatttgacataaccacataggtagtggtggagtgtttacgcaccgcgtcgtaaccagccttgtagtacttgt |
25813484 |
T |
|
| Q |
308 |
ttaaggtctctagggttacacccggagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcgtcgacgcatagaaat |
407 |
Q |
| |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25813485 |
ttatggtctctagggttacacctggagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctg---cgacgcatagaaat |
25813581 |
T |
|
| Q |
408 |
atatgataaatgtggtaagtaaagtatcaatttgaaacatataatgtgtggattattatgaaaaaatgtacaaatattatatgtattaaccttgctgtta |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25813582 |
atatgataaatgtggtaagtaaagtatcaatttgaaacatatgatgtatggattattatgaaaaaatgtacaaatagtatatgtattaaccttgctgtta |
25813681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 25788266 - 25788642
Alignment:
| Q |
8 |
attatactgaaattttttaagacttaccgacgaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattgttgtaaataaaatc |
107 |
Q |
| |
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|||||| ||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25788266 |
attataatgaaaatatttaagatttaccgaagaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattattgtaaataaaatc |
25788365 |
T |
|
| Q |
108 |
aatgttctgttgagcagacatgttttcaaacgaatcatcgaagatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagaggaaac |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788366 |
aatgttctgttgagcagacatgttttcaaacgaatcatcgaaaatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagaggaaag |
25788465 |
T |
|
| Q |
208 |
agttccttgggttctgagggtcctagcctatttgacataaccacataggtagtggtggagtgtttacacaccgcgtcgtaaccagccttgtagtacttgt |
307 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
25788466 |
agttccttgggttctgagggtcttagcctatttgacataaccacataggtagtggtggagtgtttacgcaccgcgtagtaaccagccttgtagtacttgt |
25788565 |
T |
|
| Q |
308 |
ttaaggtctctagggttacacccggagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacct |
389 |
Q |
| |
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||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25788566 |
ttatggtctctagggttacacctggagagagaggttcgtttaagagttca-----atatagactagggttttttgtatacct |
25788642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 25759494 - 25759103
Alignment:
| Q |
8 |
attatactgaaattttttaagacttaccgacgaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattgttgtaaataaaatc |
107 |
Q |
| |
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|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25759494 |
attataatgaaaatatttaagacttaccgacgaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattgttgtaaataaaaac |
25759395 |
T |
|
| Q |
108 |
aatgttctgttgagcagacatgttttcaaacgaatcatcgaagatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagaggaaac |
207 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25759394 |
aatgttttgttgagcaatcatgttttcaaacaaatcattgaagatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagaggaaag |
25759295 |
T |
|
| Q |
208 |
agttccttgggttctgagggtcctagcctatttgacataaccacataggtagtggtggagtgtttacacaccgcgtcgtaaccagc-----cttgtagta |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||| |
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| T |
25759294 |
agttccttgggttctgagggtcctagcctatttgacataaccacataggtagtggtggagtgtttacgcaccgcgccgtaaccagccttagcttgtagta |
25759195 |
T |
|
| Q |
303 |
cttgtttaaggtctctagggttacacccg--gagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcg |
392 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25759194 |
cttgtttaaggtctctagggttacacttggagagagagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcg |
25759103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 25862694 - 25862864
Alignment:
| Q |
33 |
accgacgaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattgttgtaaataaaatcaatgttctgttgagcagacatgttt |
132 |
Q |
| |
|
|||||| ||| ||||||||||||| || ||||||| ||||||||| |||||||| ||||| ||||||||| ||||||| || |||||| || ||||||| |
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|
| T |
25862694 |
accgacaaaaataagaggaccatttgaggttgtaacaaaattcaaatccgatgatcgattattgtaaatataatcaatattttgttgaacactcatgttt |
25862793 |
T |
|
| Q |
133 |
tcaaacgaatcatcgaagatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagagg |
203 |
Q |
| |
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|||| ||| | |||||| |||||||||| |||||||| || || | |||||| ||||| |||||||| |
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| T |
25862794 |
gtaaactcatctccaaagatgctgtagtagtggacatcaatcactgatcccataaggccattagcaagagg |
25862864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 12405248 - 12405522
Alignment:
| Q |
8 |
attatactgaaattttttaagacttaccgacgaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattgttgtaaataaaatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12405248 |
attatactgaaattttttaagacttaccgacgaaagtaagaggaccattcgatgttgtaataaaattcaactccgatgaacgattgttgtaaataaaatc |
12405347 |
T |
|
| Q |
108 |
aatgttctgttgagcagacatgttttcaaacgaatcatcgaagatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagaggaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12405348 |
aatgttctgttgagcagacatgttttcaaacgaatcatcaaagatgttgtagtagtgaacatcaattacagacctcataagaccattggcaagaggaaag |
12405447 |
T |
|
| Q |
208 |
agttccttgggttctgagggtcctagcctatttgacataaccacataggtagtggtggagtgtttacacaccgcg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12405448 |
agttccttgggttctgagggtcctagcctatttgacataaccacataggtagtggtggagtgtttacgcaccgcg |
12405522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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