View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17187_low_6 (Length: 411)
Name: NF17187_low_6
Description: NF17187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17187_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 40208142 - 40207747
Alignment:
| Q |
1 |
cagcaacaactgtatcattttcggagtagatggcaccaacgcggaaacctggcgaacccaagtctttggaaagactatagacaacatgaactctctcaaa |
100 |
Q |
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| T |
40208142 |
cagcaacaaccgtatcattttcagagtagatggcgccaacgcggaaacctggcaaacccaagtctttggaaagactatagacaacatgaactctctcaaa |
40208043 |
T |
|
| Q |
101 |
aatattatcagcgtctttgaagtcgttaaagtcatttctgtctttaagaatttccatgacgctgatgaaatttggagaggaaaaaacagtgccggagtaa |
200 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208042 |
aatattatcagcgtctttggagttgttaaagtcatttctgtctttaagaatttccatgacgctgatgaaatttggagaggaaaaaacagtgccggagtaa |
40207943 |
T |
|
| Q |
201 |
atctcgtcgcttatcaaatgcatgtctttgttttctttgataaagtcaacgagaagatttaattcactccttgacattgtggtgcctagcgggtttgatg |
300 |
Q |
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| T |
40207942 |
atctcgtcgcttatcaaatgcatgtctttgttttctttgataaagtcaacgagaaggtttaattcactccttgacattgtggtgcctagcgggtttgatg |
40207843 |
T |
|
| Q |
301 |
ggtttgtaaccattactcctttgactttaaggttgcgtttttgtgcctcttggtatgcttgttgcaatgcttgttcggttacttgaaagttgttgg |
396 |
Q |
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| T |
40207842 |
ggtttgtaaccattactcctttgactttaaggttgcgtttttgtgcctcttggtatgcttgttgcaatgcttgttcggttacttgaaagttgttgg |
40207747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 5134424 - 5134734
Alignment:
| Q |
18 |
ttttcggagtagatggcaccaacgcggaaacctggcgaacccaagtctttggaaagactatagacaacatgaactctctcaaaaatattatcagcgtctt |
117 |
Q |
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||||| || ||||| ||||| || |||||||| ||| |||||||||||||||| |||||||| || ||||||||||| || | || | ||||||| |
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| T |
5134424 |
ttttcagaatagatagcacctacacggaaaccgggcaaacccaagtctttggagagactataaacgacatgaactctttccgagatgt---cagcgtca- |
5134519 |
T |
|
| Q |
118 |
tgaagtcgttaaagtcatttctgtctttaagaatttccatgacgctgatgaaatttggagaggaaaaaacagtgccggagtaaatctcgtcgcttatcaa |
217 |
Q |
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|| || ||||| |||||||| || ||||| |||||||||||||| ||||| | ||||||| |||||| || || |||||||| ||||||||||| || |
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| T |
5134520 |
--aaatccttaaaatcatttctttccttaaggatttccatgacgctaatgaagctcggagaggtaaaaactgtccctgagtaaatttcgtcgcttattaa |
5134617 |
T |
|
| Q |
218 |
atgcatgtctttgttttctttgataaagtcaacgagaagatttaattcactccttgacattgtggtgcctagcgggtttgatgggtttgtaaccattact |
317 |
Q |
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||||||||||||||| |||||||| ||||||| |||||| |||||||||||| |||||||||| |||||||| ||||||||||| ||||| || | || |
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| T |
5134618 |
atgcatgtctttgttgtctttgatgaagtcaatgagaaggtttaattcactctttgacattgtagtgcctagtgggtttgatggatttgtgactaagaca |
5134717 |
T |
|
| Q |
318 |
cctttgactttaaggtt |
334 |
Q |
| |
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||||||||||||||||| |
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| T |
5134718 |
cctttgactttaaggtt |
5134734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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