View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_high_1 (Length: 792)
Name: NF17188_high_1
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Original strand, 15161067 - 15161524
Alignment:
| Q |
12 |
agtgagatgaaagtaagcatgatatagaagtcatgaatttgattgaagagggaaatgtgtatacatttggttgagaagtcttctttactttctttggata |
111 |
Q |
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| T |
15161067 |
agtgagatgaaagtaagcatgatatagaagtcatgaatttgattgaagagggaaatgtgtatacatttggttgagaagtcttgtttactttctttgggta |
15161166 |
T |
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| Q |
112 |
aacttagattaaatttagtatcatactacacattttcgtagatttataagaagatttagatttcattgaatcacaaattgttctgcaagtgatgcttaag |
211 |
Q |
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| T |
15161167 |
aacttagattaaatttagtatcatactacacattttcgtagatttataagaagatttagatttcattgaatcacaaattgttctgtaagtgatgcttaag |
15161266 |
T |
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| Q |
212 |
tatttgatagaagatatacttgtcacattaagaagatttagatttcattgatatacttgtcac--------atttagttattatacacaaatga---aga |
300 |
Q |
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| T |
15161267 |
tatttgatagaagatatacttgtcacattaagaagatttagatttcattgatatacttgtcacatttagttatttagttattatacacaaatgaaggaga |
15161366 |
T |
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| Q |
301 |
agttatacatgacagaaagaaagtaattctttttaaccatattaatcttaaga-----nnnnnnnnnnnnnnnggttacatgttagttatttacgatgaa |
395 |
Q |
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| T |
15161367 |
agatatacatgacagaaagaaagtaattctttttaaccaaattaatcttatgaatattttttattttatttttggttacatgttagttatttacaatgaa |
15161466 |
T |
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| Q |
396 |
caaattctaagcaaaaactactattttgagacatgttaattgataatgtttaagtttt |
453 |
Q |
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| T |
15161467 |
caaattctaagcaaaaactactattttgagacatgttaattgataatgtttaagtttt |
15161524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 510 - 650
Target Start/End: Original strand, 15161625 - 15161765
Alignment:
| Q |
510 |
gcctaaacggtttagctgaaaatattttgaaatatagatcgttacattagttgaaaatattttaaagagaagggtgtatctagcaagggcattttaattt |
609 |
Q |
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| T |
15161625 |
gcctaaacggtttagctgaaaatattttgaaatatagatcgttacattagttgaaaatattttaaagagaagggtgtatctagcaagggaattttaattt |
15161724 |
T |
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| Q |
610 |
tggcccaatctcaactatgaaaattttgactccagtatgtt |
650 |
Q |
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| T |
15161725 |
tggcccaatctcaactatgaaaattttgactccagtatgtt |
15161765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 639 - 774
Target Start/End: Original strand, 15167877 - 15168012
Alignment:
| Q |
639 |
ctccagtatgttaagttggcaaacccatctttgaatatgattgctcaataggccccttgaattgttcaatagaccccttgaattgctcaaaaaatcgcaa |
738 |
Q |
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| T |
15167877 |
ctccagtatgttaagttggcaaacccatctttgaatatgattgctcaataggccccttgaattgttcaatagaccccttgaattgctcaaaaaattgcga |
15167976 |
T |
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| Q |
739 |
aaacaagcatcgggagttgggacccgttgggttttt |
774 |
Q |
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| T |
15167977 |
aaacaagcatcgggagttgggacccattggcttttt |
15168012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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