View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17188_high_14 (Length: 460)

Name: NF17188_high_14
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17188_high_14
NF17188_high_14
[»] chr6 (12 HSPs)
chr6 (1-446)||(2454059-2454507)
chr6 (216-446)||(7176437-7176659)
chr6 (220-436)||(9826747-9826963)
chr6 (210-371)||(23301411-23301572)
chr6 (210-434)||(23300425-23300641)
chr6 (276-446)||(11846306-11846476)
chr6 (211-420)||(26186657-26186866)
chr6 (334-446)||(11971534-11971646)
chr6 (273-420)||(23585916-23586063)
chr6 (254-436)||(26879823-26880005)
chr6 (265-446)||(32613802-32613977)
chr6 (332-385)||(5076251-5076304)
[»] chr3 (18 HSPs)
chr3 (216-434)||(44471023-44471241)
chr3 (208-426)||(26757591-26757809)
chr3 (210-441)||(30554494-30554725)
chr3 (264-446)||(28550497-28550679)
chr3 (307-438)||(54246529-54246660)
chr3 (265-446)||(779447-779629)
chr3 (265-412)||(44681981-44682129)
chr3 (327-441)||(23659501-23659615)
chr3 (208-441)||(46892602-46892817)
chr3 (309-436)||(26918402-26918529)
chr3 (210-441)||(11503281-11503512)
chr3 (339-434)||(33231472-33231567)
chr3 (273-420)||(13870262-13870408)
chr3 (292-377)||(44285642-44285727)
chr3 (261-436)||(27524068-27524243)
chr3 (216-374)||(12937750-12937908)
chr3 (210-257)||(33231591-33231638)
chr3 (210-251)||(44682120-44682161)
[»] chr4 (8 HSPs)
chr4 (216-441)||(53393110-53393335)
chr4 (216-420)||(8606108-8606312)
chr4 (292-446)||(42141330-42141476)
chr4 (210-369)||(23107938-23108097)
chr4 (334-441)||(8056836-8056942)
chr4 (216-251)||(13207511-13207546)
chr4 (209-251)||(39839112-39839154)
chr4 (308-348)||(38264847-38264887)
[»] chr2 (18 HSPs)
chr2 (216-446)||(5526223-5526452)
chr2 (210-436)||(29109122-29109348)
chr2 (210-406)||(3919845-3920041)
chr2 (260-436)||(37630380-37630556)
chr2 (263-436)||(27866665-27866836)
chr2 (293-436)||(38607049-38607192)
chr2 (209-426)||(4240667-4240876)
chr2 (294-397)||(7772060-7772163)
chr2 (323-426)||(30906828-30906930)
chr2 (210-375)||(35954766-35954931)
chr2 (309-446)||(33036987-33037116)
chr2 (263-369)||(4638207-4638313)
chr2 (216-369)||(13852296-13852449)
chr2 (208-369)||(31111411-31111572)
chr2 (210-377)||(35961755-35961922)
chr2 (309-372)||(44018966-44019029)
chr2 (309-379)||(3690109-3690179)
chr2 (210-362)||(12893947-12894099)
[»] chr8 (13 HSPs)
chr8 (216-441)||(3767611-3767826)
chr8 (208-441)||(9505013-9505247)
chr8 (209-436)||(16570822-16571048)
chr8 (210-446)||(32321799-32322035)
chr8 (292-369)||(34760833-34760910)
chr8 (309-446)||(9040511-9040648)
chr8 (263-446)||(25456082-25456265)
chr8 (260-387)||(40434962-40435089)
chr8 (310-436)||(37379993-37380119)
chr8 (210-370)||(35948827-35948987)
chr8 (332-379)||(3555435-3555482)
chr8 (216-257)||(20860457-20860498)
chr8 (313-446)||(25808235-25808368)
[»] chr1 (13 HSPs)
chr1 (207-388)||(512950-513131)
chr1 (209-395)||(8414579-8414765)
chr1 (216-435)||(11911590-11911810)
chr1 (216-377)||(27320483-27320644)
chr1 (297-426)||(17530691-17530820)
chr1 (334-426)||(32678426-32678518)
chr1 (210-369)||(16584891-16585050)
chr1 (264-369)||(25785805-25785910)
chr1 (216-284)||(32678532-32678600)
chr1 (215-425)||(4407741-4407951)
chr1 (314-379)||(44581820-44581885)
chr1 (207-243)||(33857598-33857634)
chr1 (207-243)||(33923289-33923325)
[»] chr7 (20 HSPs)
chr7 (209-446)||(48070613-48070850)
chr7 (216-426)||(12471704-12471913)
chr7 (216-426)||(12470979-12471189)
chr7 (292-446)||(44523622-44523775)
chr7 (294-436)||(12470183-12470325)
chr7 (216-426)||(25545177-25545387)
chr7 (261-426)||(31136196-31136356)
chr7 (208-377)||(3996962-3997130)
chr7 (214-300)||(12013027-12013113)
chr7 (302-393)||(21378567-21378657)
chr7 (209-369)||(7352396-7352556)
chr7 (208-379)||(27226920-27227091)
chr7 (334-436)||(35738093-35738195)
chr7 (260-371)||(46265328-46265439)
chr7 (273-379)||(22331994-22332100)
chr7 (334-426)||(2197640-2197732)
chr7 (317-432)||(12012904-12013022)
chr7 (292-371)||(2923035-2923114)
chr7 (331-425)||(45595452-45595546)
chr7 (277-361)||(39695149-39695233)
[»] chr5 (9 HSPs)
chr5 (225-426)||(1498164-1498365)
chr5 (238-436)||(7239239-7239442)
chr5 (238-436)||(7244415-7244618)
chr5 (214-396)||(29126087-29126269)
chr5 (205-347)||(31895891-31896033)
chr5 (210-369)||(16746567-16746726)
chr5 (211-420)||(17770213-17770421)
chr5 (334-426)||(39786072-39786164)
chr5 (292-388)||(41092009-41092105)
[»] scaffold0070 (2 HSPs)
scaffold0070 (292-415)||(13828-13951)
scaffold0070 (205-280)||(33724-33799)
[»] scaffold0564 (1 HSPs)
scaffold0564 (209-367)||(6310-6472)
[»] scaffold0590 (1 HSPs)
scaffold0590 (313-441)||(8270-8398)
[»] scaffold0565 (1 HSPs)
scaffold0565 (277-367)||(1873-1963)


Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 2454507 - 2454059
Alignment:
Q  1 agtgttccaagacaaaggttcatgtgatgagttaaatcgtgtgtgctttttgtgtcgttctaacttaagatgcacggttggtagtgacagcagctagatg 100  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2454507 agtgttccaaaacaaaggttcatgtgatgtgttaaatcgtgtgtgctttttgtgtcgttctaacttaagatgcacggttggtagtgacagcagctagatg 2454408  T
Q  101 agatacctagtatatgctcattacataaatctagttataatagttaaactactgtggtcgnnnnnnnnnnnnn---cttcaaattcatggaataaatgta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||    
T  2454407 agatacctagtatatgctcattacataaatctagttataatagttaaactactgtggtcgaaaaaaaaaaaaaaaacttcaaattcatggaataaatgta 2454308  T
Q  198 tctatctataattagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  2454307 tctatctataattagggatgtaagtggttcggacaaaaccgatgaaattgaaaattcaaatggaatcaaaccgagaaagtatccgactttattaggttcg 2454208  T
Q  298 gttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgcta 397  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  2454207 gttcaaaatcgaaccgaaccaacctaaactgatatagtttggttcgattcttggtttttaattttgagatccaaagaaccaacaaaccgaatcgatgcta 2454108  T
Q  398 gcctcactccccattttagtaattttatcgctcctcacaaacacctatg 446  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2454107 gcctcactccccattttagtaatcttatcgctcctcacaaacacctatg 2454059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 216 - 446
Target Start/End: Complemental strand, 7176659 - 7176437
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    |||||||| |||||||||||||||||||| ||||||||| ||  ||||||| |||| ||||||||| || || || |||| |||| ||||||||||||||    
T  7176659 tgtaagtgtttcggacaaaaccgatgaaaccgaaaactctaaccgaaccaacccgaaaaagtatccaaccttgtttggtttggttcaaaatcgaaccgaa 7176560  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    ||||||||||| ||| ||||||||||||||| | ||||||| |||||||||||||| |        |||||||  ||||||| |||||||||||||||||    
T  7176559 ccaacctaaaccgatctagtttggttcggttatcagttttttattttgagatccaatg--------aaccgaacagatgctaacctcactccccatttta 7176468  T
Q  416 gtaattttatcgctcctcacaaacacctatg 446  Q
    ||||| ||||| |||||||||||||| ||||    
T  7176467 gtaatattatctctcctcacaaacacttatg 7176437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 220 - 436
Target Start/End: Original strand, 9826747 - 9826963
Alignment:
Q  220 agtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgac-tttattaggttcggttaaaaatcgaaccgaacca 318  Q
    ||||||||||| |||||||| |||| | |||| |||||  |||||||||||| |||||||||||| |||||| ||||||||| |||| ||||||||||||    
T  9826747 agtggttcggagaaaaccgaagaaaccaaaaattcaaactgaaccaaaccga-aaagtatccgacctttatttggttcggttgaaaaccgaaccgaacca 9826845  T
Q  319 acctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagta 418  Q
    || ||||| ||| |||||||||||| ||||  |||||||||||||| ||||||||||||||  |||| ||  |||| || ||||||| ||| ||||||||    
T  9826846 acataaaccgatctagtttggttcgattctcggtttttaattttgaaatccaaagaaccgatgaaccaaactgatgttaacctcacttcccgttttagta 9826945  T
Q  419 attttatcgctcctcaca 436  Q
    || ||||| |||||||||    
T  9826946 atattatccctcctcaca 9826963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 210 - 371
Target Start/End: Original strand, 23301411 - 23301572
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||||||||||||||| || ||| | || ||||| |||||| |||||  |||||||||||| |||  || |||| || || ||||||||| |||| |||    
T  23301411 tagggatgtaagtggtttgggcaacatcgttgaaaccgaaaattcaaactgaaccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccga 23301510  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaa 371  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  23301511 accgaaccaacctaaactgatctagtttggttcggttctcagtttttaattttgagatccaa 23301572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 434
Target Start/End: Original strand, 23300425 - 23300641
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||||||||||||||| || ||| | || ||||| |||||| |||||  |||||||||||| |||| |  |||| || || ||||||||| ||||  ||    
T  23300425 tagggatgtaagtggtttgggcaacatcgttgaaaccgaaaattcaaaccgaaccaaaccgaaaaagaaatcgaccttgtttggttcggttcaaaactga 23300524  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcccc 409  Q
    ||||||||||||||||||||| |||||| ||||||||||  ||||||||||||||||||||        |||||||||| |||||||| | |||||| ||    
T  23300525 accgaaccaacctaaactgatctagtttagttcggttctcggtttttaattttgagatcca--------acaaaccgaaccgatgctaacttcactctcc 23300616  T
Q  410 attttagtaattttatcgctcctca 434  Q
    ||||||||||| ||||| |||||||    
T  23300617 attttagtaatattatccctcctca 23300641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 276 - 446
Target Start/End: Original strand, 11846306 - 11846476
Alignment:
Q  276 gtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaa 375  Q
    ||||||||| || || |||| |||| |||| ||||| |||||||| ||||| ||| |||||||||||||||||  ||||||||||||||||||||| |||    
T  11846306 gtatccgaccttgtttggtttggttcaaaaccgaactgaaccaacttaaaccgatctagtttggttcggttctcggtttttaattttgagatccaatgaa 11846405  T
Q  376 ccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcacaaacacctatg 446  Q
    || |  |||| ||| ||||||| |||||||||||||||||||||| ||||| ||||||||| |||| ||||    
T  11846406 ccaatgaaccaaattgatgctatcctcactccccattttagtaatattatccctcctcacacacacttatg 11846476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 211 - 420
Target Start/End: Complemental strand, 26186866 - 26186657
Alignment:
Q  211 agggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaa 310  Q
    |||| ||||||||||||||||||||||||| |||||||||| | |||| |||||||||  | |||||||  ||  || |  | || ||||  |||| |||    
T  26186866 aggggtgtaagtggttcggacaaaaccgataaaatcgaaaatttaaattgaaccaaactaaaaaagtatttgatcttgtctgatttggttctaaattgaa 26186767  T
Q  311 ccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcccca 410  Q
      |||||||| ||||| ||| |||||||||| ||||||  |||||||||||| | ||||||||||||||  |  |||| |||| ||| |||  |||||||    
T  26186766 ttgaaccaacttaaaccgatctagtttggtttggttctcggtttttaattttaaaatccaaagaaccgatgagtcgaaccgattctaaccttgctcccca 26186667  T
Q  411 ttttagtaat 420  Q
    ||||||||||    
T  26186666 ttttagtaat 26186657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 446
Target Start/End: Original strand, 11971534 - 11971646
Alignment:
Q  334 gtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctc 433  Q
    |||||||||||||||  ||||||||||| ||||||||| ||| | |  |||| ||  ||||||| |||||||||||||||||||||| ||||| ||||||    
T  11971534 gtttggttcggttctcggtttttaatttagagatccaatgaatcaatgaaccaaactgatgctatcctcactccccattttagtaatattatccctcctc 11971633  T
Q  434 acaaacacctatg 446  Q
    ||| |||| ||||    
T  11971634 acacacacttatg 11971646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 420
Target Start/End: Original strand, 23585916 - 23586063
Alignment:
Q  273 aaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaa 372  Q
    |||||||||||| || ||  |||||||| |||| |||||| ||| ||| ||||| |||||||||||||| ||||||  | ||||||||||||||| ||||    
T  23585916 aaagtatccgaccttgttttgttcggttcaaaaccgaaccaaactaacgtaaaccgatatagtttggtttggttctcggattttaattttgagattcaaa 23586015  T
Q  373 gaaccgacaaaccgaatcgatgctagcctcactccccattttagtaat 420  Q
     ||  || |||  ||| |||| |||| ||||||| |||||||| ||||    
T  23586016 aaattgataaattgaaccgatactagtctcactctccattttattaat 23586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 436
Target Start/End: Original strand, 26879823 - 26880005
Alignment:
Q  254 caaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtt 353  Q
    ||||| |||||||||||| ||||||  |||| || |  | ||||||| |||||| |||||||||||  ||||||||  | | ||||||  ||||| ||||    
T  26879823 caaattgaaccaaaccgaaaaagtaatcgaccttttctgcttcggttcaaaatcaaaccgaaccaatataaactgaccttggttggttgagttctcagtt 26879922  T
Q  354 tttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcaca 436  Q
    ||| ||| |||||| ||| |||||||  ||||||| ||||| || || || ||| ||||| | |||| ||||| |||||||||    
T  26879923 tttcattgtgagattcaaggaaccgatgaaccgaaccgatggtaaccccattcctcatttcactaatattatccctcctcaca 26880005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 446
Target Start/End: Complemental strand, 32613977 - 32613802
Alignment:
Q  265 aaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttga 364  Q
    ||||||| |||||||| |||||| || || | |||| |||| |||||||||||||||||||| ||| |||||||||||  || || |||||||      |    
T  32613977 aaaccgaaaaagtatctgactttgtttggcttggttcaaaaccgaaccgaaccaacctaaaccgatctagtttggttccatttttggttttta------a 32613884  T
Q  365 gatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcacaaacacctatg 446  Q
    | |||||||||| ||  |||| || |||||||| ||||| | ||||||||| |||| ||||   |||||||| |||| ||||    
T  32613883 gttccaaagaactgatgaaccaaaccgatgctaacctcagttcccattttaataatattattcatcctcacacacacttatg 32613802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 5076251 - 5076304
Alignment:
Q  332 tagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaacc 385  Q
    ||||||||||| |||||  |||||| ||||||| |||||||||||||| |||||    
T  5076251 tagtttggttccgttctcggttttttattttgaaatccaaagaaccgataaacc 5076304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 216 - 434
Target Start/End: Original strand, 44471023 - 44471241
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    ||||||||||||||||||||||||||||||||||||  ||||  |||||||||||| || ||||||||| || ||  |||||||| |||| |||||| ||    
T  44471023 tgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaaccaaa 44471122  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    |||| |||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||| |||||||| | | |||||||| ||||    
T  44471123 ccaatctaaaccgatctagtttggttcggttcttggtttttaattttgaaatccaaagaaccgatgaaccgaaccgatgctaacataactccccagttta 44471222  T
Q  416 gtaattttatcgctcctca 434  Q
    ||||| ||||| |||||||    
T  44471223 gtaatattatccctcctca 44471241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 208 - 426
Target Start/End: Original strand, 26757591 - 26757809
Alignment:
Q  208 attagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatc 307  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||  |||||  ||| ||| ||| ||||||| |||| || || ||||  ||| ||||      
T  26757591 attaggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaatcaaacaaaatcgaaaaagtattcgacgttgtttggtttagtttaaaact 26757690  T
Q  308 gaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcc 407  Q
    ||||||||||||||||||  ||||||| |||||||||||||| | ||||||||||||||||||||||| ||| |||| ||| ||||  || ||||||||     
T  26757691 gaaccgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatccaaagaatcgataaactgaaccgatagtaacctcactct 26757790  T
Q  408 ccattttagtaattttatc 426  Q
    ||||||||||||| |||||    
T  26757791 ccattttagtaatattatc 26757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 441
Target Start/End: Complemental strand, 30554725 - 30554494
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||| ||||| ||||||| |||||| |||||||| ||||||  ||||| || | ||||||| |||||||||||| || ||  |||||||| ||||||||    
T  30554725 taggggtgtaaatggttcgaacaaaatcgatgaaaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcga 30554626  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcccc 409  Q
    |||||||||| |||||| ||| |||||||||||||||||   ||||||||||||| ||||||||||| ||  || |||| |||||| | ||||||| |||    
T  30554625 accgaaccaatctaaaccgatctagtttggttcggttctcgatttttaattttgatatccaaagaactgatgaatcgaaccgatgccatcctcacttccc 30554526  T
Q  410 attttagtaattttatcgctcctcacaaacac 441  Q
    | ||| ||||  ||||| ||| ||||| ||||    
T  30554525 aattttgtaacattatccctcatcacacacac 30554494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 264 - 446
Target Start/End: Original strand, 28550497 - 28550679
Alignment:
Q  264 caaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttg 363  Q
    |||||||| ||||||||  ||||| || ||||||||| |||  |||||||||||||| ||||| ||| |||||||||||| ||||  |||||||||||||    
T  28550497 caaaccgaaaaagtatctaactttgtttggttcggttcaaatccgaaccgaaccaacttaaacggatctagtttggttcgattctcggtttttaattttg 28550596  T
Q  364 agatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcacaaacacctatg 446  Q
    ||||| ||||||||||  ||||||||||||| || |||||||||| ||||| | ||| ||||| ||||||||| |||| ||||    
T  28550597 agatctaaagaaccgatgaaccgaatcgatgttaacctcactccctattttggcaatattatctctcctcacacacacttatg 28550679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 307 - 438
Target Start/End: Original strand, 54246529 - 54246660
Alignment:
Q  307 cgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactc 406  Q
    ||||||||||||||| |||| ||||  ||||||||||||||| | ||||||||||||||||||||||||||||| |||| || |||||||| | ||||||    
T  54246529 cgaaccgaaccaacccaaaccgataatgtttggttcggttctcaatttttaattttgagatccaaagaaccgacgaaccaaaccgatgctaacttcactc 54246628  T
Q  407 cccattttagtaattttatcgctcctcacaaa 438  Q
    ||||||||| |||| | |||||||||||||||    
T  54246629 cccattttattaatatcatcgctcctcacaaa 54246660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 446
Target Start/End: Complemental strand, 779629 - 779447
Alignment:
Q  265 aaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaa-ttttg 363  Q
    ||||||| ||||||||| || || ||  |||||||| ||||  ||| |||||||||||||||  || |||||||||||||||||| |||||||| |||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttttaatttttg 779530  T
Q  364 agatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcacaaacacctatg 446  Q
    | ||||||||||||||  ||||||| ||||||||  ||||||| ||||||| |||||  |||| ||||||||| |||| ||||    
T  779529 aaatccaaagaaccgatgaaccgaaccgatgctaatctcactctccatttttgtaatactatcactcctcacatacacttatg 779447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 412
Target Start/End: Complemental strand, 44682129 - 44681981
Alignment:
Q  265 aaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaa-cctaaactgatatagtttggttcggttcttagtttttaattttg 363  Q
    ||||||| ||||||| |||| || || ||||||| | |||| ||||| ||||||| ||||||| ||| |||||||||| ||||||| |||||||||||||    
T  44682129 aaaccgaaaaagtatacgaccttgtttggttcggatcaaaaccgaactgaaccaaacctaaaccgatctagtttggtttggttcttggtttttaattttg 44682030  T
Q  364 agatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatt 412  Q
    | |||| | |||||||||||||||| |||||||| ||||||| ||||||    
T  44682029 aaatccgatgaaccgacaaaccgaaccgatgctaacctcacttcccatt 44681981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 327 - 441
Target Start/End: Original strand, 23659501 - 23659615
Alignment:
Q  327 tgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatc 426  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||| ||||||   ||||||| |||||||| | |||||| ||||||||||||| |||||    
T  23659501 tgatctagtttgattcggttcttggtttttaattttgagatccaatgaaccggtgaaccgaaccgatgctaacatcactctccattttagtaatattatc 23659600  T
Q  427 gctcctcacaaacac 441  Q
     ||||||||| ||||    
T  23659601 cctcctcacacacac 23659615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 441
Target Start/End: Original strand, 46892602 - 46892817
Alignment:
Q  208 attagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatc 307  Q
    |||| ||||||||||||||||| ||||||||||||||   |||| |||||  |||||||||||| ||| |||||||| || || ||||||||| |||| |    
T  46892602 attatggatgtaagtggttcgggcaaaaccgatgaaacaaaaaattcaaaccgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaacc 46892701  T
Q  308 gaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcc 407  Q
    ||||| |||||          || |||||||||||| ||||  ||||||||||||||||||||| ||||   |||||     |||||||| |||||||||    
T  46892702 gaaccaaacca----------atctagtttggttcgattctcggtttttaattttgagatccaatgaac---caaac-----cgatgctaacctcactcc 46892783  T
Q  408 ccattttagtaattttatcgctcctcacaaacac 441  Q
     |||||||||||| ||||| ||| ||||| ||||    
T  46892784 tcattttagtaatattatccctcatcacacacac 46892817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 309 - 436
Target Start/End: Complemental strand, 26918529 - 26918402
Alignment:
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccc 408  Q
    ||||||||||||||||| |||| ||||||||||| ||||| | |||||||||||||||| |||||| ||||  || ||||  ||||||| ||  ||||||    
T  26918529 aaccgaaccaacctaaattgatctagtttggttcagttctcaatttttaattttgagattcaaagagccgatgaatcgaactgatgctaaccctactccc 26918430  T
Q  409 cattttagtaattttatcgctcctcaca 436  Q
     ||||||||||| ||||| |||||||||    
T  26918429 tattttagtaatattatccctcctcaca 26918402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 441
Target Start/End: Complemental strand, 11503512 - 11503281
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||| |||||| ||||  || |||||||||||||  ||||   ||||  |||||||||| | || ||||||||| || |  |||  |||| |||| |||    
T  11503512 taggggtgtaagcggttaagataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccga 11503413  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcccc 409  Q
    |||||||||| | |||| ||| |  ||||||| ||||||   ||||| ||||||||||||||  |||||| |||||||| | |||||| |||||||||||    
T  11503412 accgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactcccc 11503313  T
Q  410 attttagtaattttatcgctcctcacaaacac 441  Q
    |||||| || | ||||| ||||||||| ||||    
T  11503312 attttactattattatccctcctcacacacac 11503281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 33231567 - 33231472
Alignment:
Q  339 gttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctca 434  Q
    ||||||||||| |||||||||||||| || | |||||||||  ||||||| |||||||| |||||||||||||||||||||| ||||  |||||||    
T  33231567 gttcggttcttggtttttaattttgaaattcgaagaaccgatgaaccgaaccgatgctaacctcactccccattttagtaatattatacctcctca 33231472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 420
Target Start/End: Original strand, 13870262 - 13870408
Alignment:
Q  273 aaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaa 372  Q
    |||||||||||| || |  ||||||||| |||  |||| | ||||  ||||||| | ||| ||||| |||||||||| |||||| |||||||||||||||    
T  13870262 aaagtatccgaccttgtctggttcggttcaaagccgaatcaaaccggcctaaaccggtattgtttgattcggttcttggtttttgattttgagatccaaa 13870361  T
Q  373 gaaccgacaaaccgaatcgatgctagcctcactccccattttagtaat 420  Q
    ||||||| | |||||| ||||||||  ||||| |||||||||| ||||    
T  13870362 gaaccgaaagaccgaaccgatgcta-actcaccccccattttactaat 13870408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 44285642 - 44285727
Alignment:
Q  292 ggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaacc 377  Q
    ||||||||| |||| |||||||||||||||||||  ||| ||||||||||| |||||  |||||||||||||| || |||||||||    
T  44285642 ggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggttcagttctcggtttttaattttgaaattcaaagaacc 44285727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 436
Target Start/End: Original strand, 27524068 - 27524243
Alignment:
Q  261 aaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaatt 360  Q
    ||||||||||| || |||| |||| || || ||||||| | |||| | |||| |||||| |||||  ||  | |||||||||||||||  ||||||||||    
T  27524068 aaccaaaccgaaaaggtattcgaccttgtttggttcggatcaaaaccaaaccaaaccaatctaaatcgaccttgtttggttcggttctctgtttttaatt 27524167  T
Q  361 ttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcaca 436  Q
    || |||||||| ||| |||  ||||||| | ||| || || |||||||||||||| || | ||||| |||||||||    
T  27524168 ttcagatccaaggaatcgatgaaccgaaccaatggtaaccccactccccattttactattattatctctcctcaca 27524243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 374
Target Start/End: Complemental strand, 12937908 - 12937750
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    |||||||| |||||| |||| |||||||| ||||||  ||||  |||| ||| ||| |||||||  || ||| || |||| | || |||| |||||||||    
T  12937908 tgtaagtgattcggataaaatcgatgaaaccgaaaatccaaaccgaactaaatcgaaaaagtattagattttgtttggtttgattgaaaaccgaaccgaa 12937809  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaaga 374  Q
    ||||||||||| |||  | |||||||||||||| | ||||| || || |||||||||||    
T  12937808 ccaacctaaaccgatcaattttggttcggttctcaatttttcatcttaagatccaaaga 12937750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 33231638 - 33231591
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaa 257  Q
    ||||| |||||||||||||||||||| |||||||| |||||| |||||    
T  33231638 taggggtgtaagtggttcggacaaaatcgatgaaaccgaaaattcaaa 33231591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 44682161 - 44682120
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaa 251  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||    
T  44682161 taggggtgtaagtggtttggacaaaaccgatgaaaccgaaaa 44682120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 216 - 441
Target Start/End: Complemental strand, 53393335 - 53393110
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    ||||||||||||||||||||||||||||| ||||||  ||||  |||||||||| | |||||||||||| || || ||||||||| ||||  ||||||||    
T  53393335 tgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccgaa 53393236  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    ||||||||||| ||| |||||||||||||||||  |||| ||| ||||| |||||| |||||||  ||||||| |||||||| |||||||  ||||||||    
T  53393235 ccaacctaaaccgatctagtttggttcggttctcggtttataactttgaaatccaatgaaccgatgaaccgaaccgatgctaacctcactttccatttta 53393136  T
Q  416 gtaattttatcgctcctcacaaacac 441  Q
    ||||| ||||| ||| ||||| ||||    
T  53393135 gtaatattatccctcttcacacacac 53393110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 216 - 420
Target Start/End: Complemental strand, 8606312 - 8606108
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    |||||||||||||||||||||||| ||||  || |    ||||  ||||||||||| ||||||||| ||||| || || |||||| |||| | || ||||    
T  8606312 tgtaagtggttcggacaaaaccgacgaaactgatagtcaaaattaaaccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatcgaa 8606213  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    |||| |||||| ||| | | ||||||||||||| ||||||| |||||||||||||| ||||| |  || |||| ||||| || || ||||||||||||||    
T  8606212 ccaatctaaaccgatcttggttggttcggttctcagtttttcattttgagatccaaggaaccaatgaatcgaaccgatggtaaccacactccccatttta 8606113  T
Q  416 gtaat 420  Q
     ||||    
T  8606112 ctaat 8606108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 292 - 446
Target Start/End: Original strand, 42141330 - 42141476
Alignment:
Q  292 ggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcg 391  Q
    ||||||||| |||| ||||| |||| ||||||||  ||| || ||||||||||||||| |||||||||||||||||||||||        ||||||| ||    
T  42141330 ggttcggttcaaaaccgaactgaacaaacctaaatcgatctactttggttcggttcttggtttttaattttgagatccaaag--------aaccgaaccg 42141421  T
Q  392 atgctagcctcactccccattttagtaattttatcgctcctcacaaacacctatg 446  Q
    ||||||  |||||||| |||||||||||| ||||  ||||||||| |||| ||||    
T  42141422 atgctaaactcactcctcattttagtaatattatacctcctcacacacacttatg 42141476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 369
Target Start/End: Complemental strand, 23108097 - 23107938
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||| |||||||||||||||||||||| | |||| |||||   ||||  ||||||||| |  ||| |||||||| || || |||| ||||  ||| |||    
T  23108097 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccga 23107998  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatcc 369  Q
     ||||||||| | |||| ||| |||||||||| | ||| | |||||| |||| |||||||    
T  23107997 tccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatcc 23107938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 441
Target Start/End: Original strand, 8056836 - 8056942
Alignment:
Q  334 gtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctc 433  Q
    |||||||||||||||  | |||| ||||||||||||||  ||||||  ||| ||| |||| ||| || |||||||||||||| |||| |||||  |||||    
T  8056836 gtttggttcggttctc-gattttcattttgagatccaagaaaccgatgaactgaaccgatcctaaccccactccccattttactaatattatccttcctc 8056934  T
Q  434 acaaacac 441  Q
    ||| ||||    
T  8056935 acacacac 8056942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 13207546 - 13207511
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaa 251  Q
    |||||| |||||||||||||||||||||||||||||    
T  13207546 tgtaagcggttcggacaaaaccgatgaaatcgaaaa 13207511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 39839154 - 39839112
Alignment:
Q  209 ttagggatgtaagtggttcggacaaaaccgatgaaatcgaaaa 251  Q
    |||||| |||||||||||||||| |||||||||||| ||||||    
T  39839154 ttaggggtgtaagtggttcggacgaaaccgatgaaaccgaaaa 39839112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 38264887 - 38264847
Alignment:
Q  308 gaaccgaaccaacctaaactgatatagtttggttcggttct 348  Q
    ||||||||||||||||||||||| || ||||||| ||||||    
T  38264887 gaaccgaaccaacctaaactgatttaatttggtttggttct 38264847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 216 - 446
Target Start/End: Original strand, 5526223 - 5526452
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    |||||||||| ||||||||||| | |||||||||||  |||||  ||||||||||| || ||||||||| || ||  |||||||| ||||  |||| |||    
T  5526223 tgtaagtggtccggacaaaaccaaagaaatcgaaaatccaaattaaaccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactgaac-gaa 5526321  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||| ||||||||  ||||||||||||||||    
T  5526322 ccaacctaaaccgatctagtttggttcggttctcagtttttaattttgagatccaaagaacagatgaaccgaaccgatgctaatctcactccccatttta 5526421  T
Q  416 gtaattttatcgctcctcacaaacacctatg 446  Q
    ||| | ||||| ||||| ||| |||| ||||    
T  5526422 gtattattatccctccttacacacacttatg 5526452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 210 - 436
Target Start/End: Complemental strand, 29109348 - 29109122
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||| ||||||||||||||||||||| |||||||  |||||  ||||  ||||||||| || ||| |||||||| || || ||||| ||| |||| |||    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccga 29109249  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcccc 409  Q
    |||||| ||||||||||  || |||||||||| ||||||  |||||||||||||||||||||||||||||  |||| ||||||||||| |||  || |||    
T  29109248 accgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatccaaagaaccgatgaaccaaatcgatgctaaccttccttccc 29109149  T
Q  410 attttagtaattttatcgctcctcaca 436  Q
    ||||||||||| ||||| | |||||||    
T  29109148 attttagtaatattatcccccctcaca 29109122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 210 - 406
Target Start/End: Complemental strand, 3920041 - 3919845
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||||||||| ||||| | |||||||| |||||| | |||| |||||  ||| |||||||| |||| || ||||||| || |||| |||| |||| |||    
T  3920041 tagggatgtaactggttggaacaaaaccaatgaaacctaaaattcaaactgaatcaaaccgaaaaagcattcgactttgtttggtttggttcaaaaccga 3919942  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactc 406  Q
    |||||||||| |||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||||||||  ||||||| |||||||| | ||||||    
T  3919941 accgaaccaaactaaaccgatctagtttggtttggttcttaatttttaattttgagatctaaagaaccgatgaaccgaaccgatgctaacttcactc 3919845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 260 - 436
Target Start/End: Original strand, 37630380 - 37630556
Alignment:
Q  260 gaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaat 359  Q
    |||||||||||| ||||||||  || ||  | |||| |||| |||||||| || ||||||||||||||||| ||||||||||| |||||  |||||||||    
T  37630380 gaaccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggttcagttctcggtttttaat 37630479  T
Q  360 tttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcaca 436  Q
    |||||||||||| ||||||   |||||||| ||||||| | |||||||||| ||||||||| ||||| |||||||||    
T  37630480 tttgagatccaatgaaccggtgaaccgaatggatgctaacatcactccccactttagtaatattatccctcctcaca 37630556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 263 - 436
Target Start/End: Original strand, 27866665 - 27866836
Alignment:
Q  263 ccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaatttt 362  Q
    ||||||||| |||||||||||| ||  | ||||||||| |||| ||||| |||||||| |||| ||||  ||||||||||| ||||  ||||||||||||    
T  27866665 ccaaaccga-aaagtatccgaccttgcttggttcggttcaaaaccgaactgaaccaacttaaattgatcgagtttggttcgattctcggtttttaatttt 27866763  T
Q  363 gagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcaca 436  Q
    ||||||| |||||||||  ||| ||| ||||| || |||||||| ||||||||||||| ||||| |||||||||    
T  27866764 gagatcccaagaaccgatgaactgaaccgatgtta-cctcactcaccattttagtaatattatcactcctcaca 27866836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 436
Target Start/End: Original strand, 38607049 - 38607192
Alignment:
Q  293 gttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcga 392  Q
    ||||| || |||| ||||||||||||| |||||||||  | |||||||||||||||| |||||| ||||||||||||| | ||||||  |||||| | ||    
T  38607049 gttcgattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttga 38607148  T
Q  393 tgctagcctcactccccattttagtaattttatcgctcctcaca 436  Q
    ||||| || ||||| |||||||| |||| ||||| |||||||||    
T  38607149 tgctaaccacactcgccattttactaatgttatccctcctcaca 38607192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 426
Target Start/End: Original strand, 4240667 - 4240876
Alignment:
Q  209 ttagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcg 308  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||  |||   ||||||||         ||| |||| || || |||||  || |||||||    
T  4240667 ttagggatgtaagtggtttggacaaaactgatgaaaccgaaaatccaagccgaaccaaa---------tatacgaccttgtttggttccattcaaaatcg 4240757  T
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccc 408  Q
    ||||||||||||| |||  |||||||||| ||| |||||||   |||||||||||||||||||||| |||| ||||| || |||||||| | | |||||     
T  4240758 aaccgaaccaaccaaaatcgatatagtttagtttggttcttgaattttaattttgagatccaaagatccgataaaccaaaccgatgctaacattactcct 4240857  T
Q  409 ca-ttttagtaattttatc 426  Q
    || |||||||||| |||||    
T  4240858 catttttagtaatattatc 4240876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 397
Target Start/End: Complemental strand, 7772163 - 7772060
Alignment:
Q  294 ttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgat 393  Q
    ||||||| |||||||||||||||||| |||||| ||| ||||||||||||||| || |||||| ||||| ||||  ||||||||||  ||  ||||||||    
T  7772163 ttcggtttaaaatcgaaccgaaccaagctaaaccgatctagtttggttcggtttttggtttttgattttcagattgaaagaaccgatgaattgaatcgat 7772064  T
Q  394 gcta 397  Q
    ||||    
T  7772063 gcta 7772060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 426
Target Start/End: Complemental strand, 30906930 - 30906828
Alignment:
Q  323 aaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattt 422  Q
    |||| ||||||||||| |||||||||  | ||| ||||||||||||||||||||| | |||| ||||||||| || ||||||| |||||||||||||| |    
T  30906930 aaaccgatatagtttgattcggttctcggattt-aattttgagatccaaagaaccaataaactgaatcgatggtaacctcacttcccattttagtaatat 30906832  T
Q  423 tatc 426  Q
    ||||    
T  30906831 tatc 30906828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 375
Target Start/End: Complemental strand, 35954931 - 35954766
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    |||||||||||| |||||  |||||| ||| | || | |||| | |||  ||| |||| ||| |||||||||||| || ||  ||| |||| ||||||||    
T  35954931 tagggatgtaagcggttcaaacaaaatcgacgtaaccaaaaatttaaaccgaatcaaatcgaaaaagtatccgaccttgttttgtttggtttaaaatcga 35954832  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaa 375  Q
    || ||||||||||||   ||| || ||||||| |||||| ||||||| ||||||||||||||||||    
T  35954831 actgaaccaacctaactcgatctaatttggtttggttctcagtttttgattttgagatccaaagaa 35954766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 446
Target Start/End: Complemental strand, 33037116 - 33036987
Alignment:
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccc 408  Q
    |||||||||||| ||||| ||| ||||||||||||||||||  ||||||| ||||| || |||||        ||| |||||||||||| | |||||| |    
T  33037116 aaccgaaccaacttaaaccgatttagtttggttcggttcttgatttttaaatttgaaattcaaag--------aactgaatcgatgctaacttcactctc 33037025  T
Q  409 cattttagtaattttatcgctcctcacaaacacctatg 446  Q
    |||||||||||| ||||| ||||||||| ||| |||||    
T  33037024 cattttagtaatattatccctcctcacacacatctatg 33036987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 369
Target Start/End: Original strand, 4638207 - 4638313
Alignment:
Q  263 ccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaatttt 362  Q
    ||||||||| ||| |||||||| || || |||||||||  ||||||| ||||||||| | | |||||| |||||||||| ||||| | |||||| |||||    
T  4638207 ccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcatttt 4638306  T
Q  363 gagatcc 369  Q
    |||||||    
T  4638307 gagatcc 4638313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 369
Target Start/End: Complemental strand, 13852449 - 13852296
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    ||||||| |||||||||||||| | ||||||||||   ||||| ||| |||| | | ||| |||| |||||| || | |||||||  ||| ||| || ||    
T  13852449 tgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatccaaa 13852350  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatcc 369  Q
    |||| | |||| ||| |||||||||| ||||| |||||||| ||||||||||||    
T  13852349 ccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatcc 13852296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 369
Target Start/End: Original strand, 31111411 - 31111572
Alignment:
Q  208 attagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatc 307  Q
    ||||||| |||||||||||  ||||||| | | |||| ||||||  ||||| |||||||||||| ||| |||||||| || || |||||||||  |||      
T  31111411 attaggggtgtaagtggtttagacaaaatcaacgaaaccgaaaatccaaattgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaact 31111510  T
Q  308 gaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatcc 369  Q
    || | |||||||   |||| ||| |||||||||| ||||| | |||||| ||||||||||||    
T  31111511 gatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatcc 31111572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 377
Target Start/End: Complemental strand, 35961922 - 35961755
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    |||||||||||| ||||| ||||||| ||||| ||  ||||| | |||  ||||||||  || ||||||| | || || ||  ||| |||| ||||||||    
T  35961922 tagggatgtaagcggttcagacaaaatcgatgtaactgaaaatttaaaccgaaccaaattgaaaaagtattctaccttgttttgtttggttcaaaatcga 35961823  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaacc 377  Q
    |  |||||||||| ||  ||| || |||| ||||||||| ||||||| ||||||||||| ||||||||    
T  35961822 attgaaccaaccttaatcgatctaatttgattcggttctcagtttttgattttgagatctaaagaacc 35961755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 44019029 - 44018966
Alignment:
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaa 372  Q
    |||||||||||| ||||| ||| |||||||||||||||||  | ||||||||||||||||||||    
T  44019029 aaccgaaccaacttaaaccgatttagtttggttcggttctcggattttaattttgagatccaaa 44018966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 3690179 - 3690109
Alignment:
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccga 379  Q
    |||| ||||||||||||| ||| |||||||||||||||||   ||||||||||||||||| || |||||||    
T  3690179 aaccaaaccaacctaaaccgatctagtttggttcggttctcgatttttaattttgagatctaatgaaccga 3690109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 362
Target Start/End: Complemental strand, 12894099 - 12893947
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||| ||| |||||||| ||||||||| | |||||| |||   ||||  |||||||||| | || ||||||||| || || ||||||||| ||||   |    
T  12894099 taggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaactgaaccaaaccaaaaatgtatccgaccttgtttggttcggttcaaaacaaa 12894000  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaatttt 362  Q
    |||||||||| |||||| ||  |  |||||||| ||||| |||||||||||||    
T  12893999 accgaaccaatctaaaccgaacttctttggttcagttctcagtttttaatttt 12893947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 216 - 441
Target Start/End: Complemental strand, 3767826 - 3767611
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    ||||||||||||||||||||||||||||| ||||||           ||||||||| |||||||||||| || ||  |||||||| |||| |||||||||    
T  3767826 tgtaagtggttcggacaaaaccgatgaaaccgaaaat----------ccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaa 3767737  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    |||| |||||| ||| |||||||||| ||||||  |||||| |||||||||||||| |||||||  ||||||| |||||||| |||||||||||||||||    
T  3767736 ccaatctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactccccatttta 3767637  T
Q  416 gtaattttatcgctcctcacaaacac 441  Q
    ||||| ||||| || |||||| ||||    
T  3767636 gtaatattatcccttctcacacacac 3767611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 208 - 441
Target Start/End: Original strand, 9505013 - 9505247
Alignment:
Q  208 attagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaag-tatccgactttattaggttcggttaaaaat 306  Q
    ||||||| ||||||||||| ||| ||||||||||||| ||||||  ||||   ||||||| ||| |||  ||||| || || || |||||| || |||||    
T  9505013 attaggggtgtaagtggtttggataaaaccgatgaaaccgaaaatccaaacctaaccaaaacgaaaaaaatatccaaccttgtttggttcgattcaaaat 9505112  T
Q  307 cgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactc 406  Q
    ||||||||||||||| |||| |||||||||||||||||||||  | |||||||||||| ||||||  |||||| |||||||| |||||| | ||||||||    
T  9505113 cgaaccgaaccaaccaaaaccgatatagtttggttcggttctaggattttaattttgaaatccaacaaaccgataaaccgaaccgatgccaacctcactc 9505212  T
Q  407 cccattttagtaattttatcgctcctcacaaacac 441  Q
    |||||||||||||| |||||  |||||||| ||||    
T  9505213 cccattttagtaatattatccttcctcacacacac 9505247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 209 - 436
Target Start/End: Complemental strand, 16571048 - 16570822
Alignment:
Q  209 ttagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcg 308  Q
    |||||| ||||| ||||| ||||||||||||||||||| |||| |||||  |||||||||| | ||| ||||| || || || |||| |||| |||| ||    
T  16571048 ttaggggtgtaattggtttggacaaaaccgatgaaatcaaaaattcaaaccgaaccaaaccaaaaaa-tatccaaccttgtttggtttggttcaaaaccg 16570950  T
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccc 408  Q
    |||| ||||||||||||| ||| || ||||||| ||||||   ||||||||||||||||||||||||||||  ||| ||| |||||||| | ||||||||    
T  16570949 aaccaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatccaaagaaccgatgaactgaaccgatgctaacttcactccc 16570850  T
Q  409 cattttagtaattttatcgctcctcaca 436  Q
    |||||||||| | ||||| |||||||||    
T  16570849 cattttagtattattatccctcctcaca 16570822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 210 - 446
Target Start/End: Original strand, 32321799 - 32322035
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||| || |||||||||||| ||||| ||||||| |||||||  |||   || |||||||| ||||||| |||| || || ||||||||| |||| | |    
T  32321799 taggggtgcaagtggttcggataaaactgatgaaaccgaaaacctaaaccaaatcaaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaa 32321898  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcccc 409  Q
    |||||| |||| ||||| ||| || ||||||||||||||  |||||||||||| |||| ||| ||||||| ||||| || | |||||| |||||||| ||    
T  32321899 accgaatcaacataaaccgatctaatttggttcggttctcggtttttaattttaagattcaatgaaccgataaaccaaaccaatgctaacctcactctcc 32321998  T
Q  410 attttagtaattttatcgctcctcacaaacacctatg 446  Q
    ||||||||||| ||||| ||||||||| |||| ||||    
T  32321999 attttagtaatattatctctcctcacacacacttatg 32322035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 34760910 - 34760833
Alignment:
Q  292 ggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatcc 369  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||| ||||||||||||    
T  34760910 ggttcggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggtttggttcttggtttttgattttgagatcc 34760833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 446
Target Start/End: Original strand, 9040511 - 9040648
Alignment:
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccc 408  Q
    ||||||||||| |||||| ||| | |||||||| ||||||  |||||| ||||||||||| ||  ||||||  |||||| | ||||||| || |||| ||    
T  9040511 aaccgaaccaatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaaccgagttgatgctaaccccacttcc 9040610  T
Q  409 cattttagtaattttatcgctcctcacaaacacctatg 446  Q
    ||||||| || | ||||| ||||||||| |||| ||||    
T  9040611 cattttactattattatccctcctcacacacacttatg 9040648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 446
Target Start/End: Complemental strand, 25456265 - 25456082
Alignment:
Q  263 ccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaatttt 362  Q
    ||||||||  || ||||||||| || |  ||||| ||| |||| ||||||||| ||| ||||||  || | |||||||| |||| |  |||||| |||||    
T  25456265 ccaaaccggaaatgtatccgaccttgtctggttcagttcaaaaccgaaccgaatcaatctaaaccaatcttgtttggtttggttatcggtttttcatttt 25456166  T
Q  363 gagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctcacaaacacctatg 446  Q
    |||||||||  ||||||  || ||||  ||||||| ||||||||||||||||| || | ||||| ||| ||||| |||| ||||    
T  25456165 gagatccaataaaccgatgaatcgaactgatgctaacctcactccccattttactattattatccctcttcacacacacttatg 25456082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 387
Target Start/End: Complemental strand, 40435089 - 40434962
Alignment:
Q  260 gaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaat 359  Q
    ||||||||| |||||||||||||||||| |   |||  ||| ||||||||||| ||| ||  |||||  || || ||||| |||||||| | ||||| ||    
T  40435089 gaaccaaactgagaaagtatccgactttgtctagttgagttcaaaatcgaaccaaacaaatgtaaaccaatttattttggctcggttctcaattttttat 40434990  T
Q  360 tttgagatccaaagaaccgacaaaccga 387  Q
    ||| |||||||||||||||| |||||||    
T  40434989 ttttagatccaaagaaccgataaaccga 40434962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 436
Target Start/End: Complemental strand, 37380119 - 37379993
Alignment:
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcccc 409  Q
    |||||||||| ||||||||| ||  |||  ||||||||| ||||||| ||||||||||| || |||| |   ||||||| | ||| || || ||||| ||    
T  37380119 accgaaccaatctaaactgacattatttatttcggttctcagtttttcattttgagatctaacgaacgggtgaaccgaaccaatggtaaccccactctcc 37380020  T
Q  410 attttagtaattttatcgctcctcaca 436  Q
    |||||| |||| ||||| |||||||||    
T  37380019 attttactaatattatcactcctcaca 37379993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 370
Target Start/End: Original strand, 35948827 - 35948987
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||| |||||||| ||||||||||||| | |||| |||||   ||||| |||||||| | | ||| ||||||||||| || |||||||||  ||| |||    
T  35948827 taggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccga 35948926  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatcca 370  Q
     ||||| ||  | |||  ||| |||||||||| | ||| | |||||| |||| ||||||||    
T  35948927 tccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatcca 35948987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 3555482 - 3555435
Alignment:
Q  332 tagtttggttcggttcttagtttttaattttgagatccaaagaaccga 379  Q
    |||||||||| |||||||| ||||||||||||| || |||||||||||    
T  3555482 tagtttggtttggttcttaatttttaattttgaaattcaaagaaccga 3555435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 20860498 - 20860457
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaa 257  Q
    ||||||||||||| ||||||||||||||| |||||| |||||    
T  20860498 tgtaagtggttcgaacaaaaccgatgaaaccgaaaattcaaa 20860457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 446
Target Start/End: Complemental strand, 25808368 - 25808235
Alignment:
Q  313 gaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatt 412  Q
    ||||||| |||||| ||| |  ||||||| | ||||  |||||| ||||||||||||||  || |||  || |||| |||||||| ||||||||| ||||    
T  25808368 gaaccaatctaaaccgatcttttttggtttgattctcggtttttcattttgagatccaagaaatcgatgaatcgaaccgatgctaacctcactcctcatt 25808269  T
Q  413 ttagtaattttatcgctcctcacaaacacctatg 446  Q
    ||| || | ||||| ||| ||||| |||| ||||    
T  25808268 ttaatattattatccctcttcacacacacttatg 25808235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 207 - 388
Target Start/End: Original strand, 512950 - 513131
Alignment:
Q  207 aattagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaat 306  Q
    |||||| | ||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||| ||||||||| |  || || ||||||||| ||||     
T  512950 aattagaggtgtaagtggttcggacaaaactgatgaaatcaaaaacccaaatcgaaccaaaccgaaaaagtatccaatcttgtttggttcggttcaaaac 513049  T
Q  307 cgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaa 388  Q
    | |||||||||||||||||| ||| ||||||| |||| |||||| ||||||||||||||||||||  |||||| ||||||||    
T  513050 caaaccgaaccaacctaaaccgatctagtttgattcgattcttaatttttaattttgagatccaataaaccgataaaccgaa 513131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 209 - 395
Target Start/End: Complemental strand, 8414765 - 8414579
Alignment:
Q  209 ttagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcg 308  Q
    ||||||||||||||||||||||||||||||||||||  |||||  ||||  |||| ||||||| |||||||||||| || || |||| |||| ||||  |    
T  8414765 ttagggatgtaagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaaagtatccgaccttgtttggtttggttcaaaactg 8414666  T
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgc 395  Q
    |||||||   || |||||  || |||||||||||  ||||  ||||||||||||||||||||||||||||| |||| ||| ||||||    
T  8414665 aaccgaagacacataaaccaatctagtttggttctattctcggtttttaattttgagatccaaagaaccgataaactgaaccgatgc 8414579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 435
Target Start/End: Original strand, 11911590 - 11911810
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaa-gtatccgactttattaggttcggttaaaaatcgaaccga 314  Q
    ||||||||||| |||| |||||||||||| | |||||  |||   ||||||  ||| ||| ||||||||| || || ||||||||| |||| ||||||||    
T  11911590 tgtaagtggtttggaccaaaccgatgaaaccaaaaacataaaccaaaccaattcgaaaaaagtatccgaccttgtttggttcggttcaaaaccgaaccga 11911689  T
Q  315 accaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttt 414  Q
    |||||||||||| ||| ||||||| ||  |||||| |||||||||||||| |||| | |||||||  |||| || |||| |||  ||||||||||||||     
T  11911690 accaacctaaaccgatctagtttgatttagttcttggtttttaattttgaaatccgatgaaccgatgaaccaaaccgatactaaactcactccccatttg 11911789  T
Q  415 agtaattttatcgctcctcac 435  Q
    |||||| ||||| ||| ||||    
T  11911790 agtaatattatccctcatcac 11911810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 216 - 377
Target Start/End: Complemental strand, 27320644 - 27320483
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    ||||||||||| |||| |||||||||||| ||||||   |||  ||| |||| | | |||||||||||| || || ||||||||| |||||| |||||||    
T  27320644 tgtaagtggtttggacgaaaccgatgaaaccgaaaatctaaactgaatcaaatcaaaaaagtatccgaccttgtttggttcggttcaaaatcaaaccgaa 27320545  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaacc 377  Q
    ||||| | ||  ||| ||||||||||||||| |  |||||||||| |||||||||| |||||    
T  27320544 ccaacattaaaagatctagtttggttcggttttcggtttttaattatgagatccaatgaacc 27320483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 426
Target Start/End: Original strand, 17530691 - 17530820
Alignment:
Q  297 ggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgct 396  Q
    |||| |||| ||||||||||||||  |||| |||||| ||||||||||||||  | ||||  |||||| |||||||||||| | ||||| || |||||||    
T  17530691 ggtttaaaaccgaaccgaaccaactaaaaccgatataatttggttcggttctccgattttttttttgatatccaaagaaccaataaaccaaaccgatgct 17530790  T
Q  397 agcctcactccccattttagtaattttatc 426  Q
    | | |||||| ||||||||||||| |||||    
T  17530791 aacttcactctccattttagtaatattatc 17530820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 32678518 - 32678426
Alignment:
Q  334 gtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatc 426  Q
    |||||| ||||||||  ||||||||||||||||||||| |||||||  || ||||  ||||||| |||||||||||||||||||||| |||||    
T  32678518 gtttggctcggttctcggtttttaattttgagatccaatgaaccgatgaatcgaactgatgctaacctcactccccattttagtaatattatc 32678426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 369
Target Start/End: Complemental strand, 16585050 - 16584891
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    ||||| |||||||||||||||||||||| | |||| |||||   ||||  |||||||| ||| ||| ||||| || || || |||||||||  ||| |||    
T  16585050 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16584951  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatcc 369  Q
     ||||||||| | | || ||| |||||||||| ||||| | |||||| |||| |||||||    
T  16584950 tccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatcc 16584891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 369
Target Start/End: Original strand, 25785805 - 25785910
Alignment:
Q  264 caaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttg 363  Q
    |||||||| ||| |||||||| || || |||||||||  ||| ||| ||||||||| | |||| |||||||||||||| ||||| | |||||| |||| |    
T  25785805 caaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcg 25785904  T
Q  364 agatcc 369  Q
    ||||||    
T  25785905 agatcc 25785910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 32678600 - 32678532
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgac 284  Q
    ||||||||||||| |||||||||||||||||||||| |||||  |||| || |||| ||| ||||||||    
T  32678600 tgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaactaagccgaaaaaatatccgac 32678532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 425
Target Start/End: Complemental strand, 4407951 - 4407741
Alignment:
Q  215 atgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccga 314  Q
    ||||||| |||| |||||||||||| |||| | |||  | ||||   |||||| ||| ||||||| |||| || |  ||||||||| |||| |||||||     
T  4407951 atgtaagcggtttggacaaaaccgacgaaaccaaaagtttaaatcagaccaaatcgaaaaagtattcgacattgtctggttcggttcaaaaccgaaccgg 4407852  T
Q  315 accaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttt 414  Q
    || || ||||||  || | |||||||||| |||| | ||||| ||||||||||||||  ||| || ||||| || ||||| || |  |||| ||||||||    
T  4407851 actaatctaaacatatcttgtttggttcgattctcattttttcattttgagatccaagaaactgataaaccaaaccgatgttaactccacttcccatttt 4407752  T
Q  415 agtaattttat 425  Q
    | |||| ||||    
T  4407751 actaatattat 4407741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 44581885 - 44581820
Alignment:
Q  314 aaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccga 379  Q
    |||| ||||||||| || ||||||| ||||||||||  ||||| ||||||||||||||| ||||||    
T  44581885 aaccgacctaaactaatctagtttgattcggttcttgattttttattttgagatccaaataaccga 44581820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 33857598 - 33857634
Alignment:
Q  207 aattagggatgtaagtggttcggacaaaaccgatgaa 243  Q
    |||||||| |||||||||||||||||||||| |||||    
T  33857598 aattaggggtgtaagtggttcggacaaaaccaatgaa 33857634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 33923325 - 33923289
Alignment:
Q  207 aattagggatgtaagtggttcggacaaaaccgatgaa 243  Q
    |||||||| |||||||||||||||||||||| |||||    
T  33923325 aattaggggtgtaagtggttcggacaaaaccaatgaa 33923289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 209 - 446
Target Start/End: Original strand, 48070613 - 48070850
Alignment:
Q  209 ttagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcg 308  Q
    |||||| |||||||||||||||||||| |||| ||| ||||||   |||  |||| ||||| | ||| |||||||| || || | || |||| |||| ||    
T  48070613 ttaggggtgtaagtggttcggacaaaatcgatcaaaccgaaaatctaaaccgaactaaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccg 48070712  T
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccc 408  Q
    |||||||| ||||||||| ||| ||||||| |||||||||  ||||||||||||||||||||||||||||| |||| ||| ||||| || |||||||| |    
T  48070713 aaccgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatccaaagaaccgataaactgaaccgatgttaacctcactcac 48070812  T
Q  409 cattttagtaattttatcgctcctcacaaacacctatg 446  Q
    ||||| ||||||  |||| ||| ||||| |||| ||||    
T  48070813 catttcagtaataatatccctcttcacacacacttatg 48070850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 216 - 426
Target Start/End: Complemental strand, 12471913 - 12471704
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    ||||||||||||||| |||||||||||||| |||||  ||||  |||| |||| || || |||||  |  ||||| ||||| ||| |||| |||||||||    
T  12471913 tgtaagtggttcggataaaaccgatgaaattgaaaatccaaaccgaacaaaactgaaaacgtatctcatcttatt-ggttctgttcaaaaccgaaccgaa 12471815  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    ||||| ||||  ||| |||||| ||||||||||||||||||||||||||||| ||||||| |||  ||| ||||||||| || ||||||||| |||||||    
T  12471814 ccaacttaaatcgatctagtttagttcggttcttagtttttaattttgagattcaaagaatcgatgaactgaatcgatgttaacctcactcctcatttta 12471715  T
Q  416 gtaattttatc 426  Q
    ||||| |||||    
T  12471714 gtaatattatc 12471704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 426
Target Start/End: Complemental strand, 12471189 - 12470979
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    ||||||||||| ||| ||||||||||||| ||| || |||||  |||| |||| || |||||||| ||   | || ||||| ||| ||||||||||| ||    
T  12471189 tgtaagtggtttggataaaaccgatgaaaccgagaattcaaaccgaacaaaactgaaaaagtatctgatcctgtttggttcagttcaaaatcgaacctaa 12471090  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    ||||||||||  | | |||||| |||||||||| ||||||||||||||||||||||| ||||||  |||  |||||||| ||  ||||||||||||||||    
T  12471089 ccaacctaaatcggtctagtttagttcggttctcagtttttaattttgagatccaaaaaaccgatgaacttaatcgatgttaatctcactccccatttta 12470990  T
Q  416 gtaattttatc 426  Q
    ||||| |||||    
T  12470989 gtaatattatc 12470979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 292 - 446
Target Start/End: Complemental strand, 44523775 - 44523622
Alignment:
Q  292 ggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcg 391  Q
    ||||||||| |||||| ||||||||||||||||||  ||||| ||||||||||||||   ||||||||||||||| |||||||| ||| |||| ||||||    
T  44523775 ggttcggttcaaaatcaaaccgaaccaacctaaaccaatataatttggttcggttctcgatttttaattttgaga-ccaaagaaacgataaactgaatcg 44523677  T
Q  392 atgctagcctcactccccattttagtaattttatcgctcctcacaaacacctatg 446  Q
    ||  || |||||||| ||||||||||||| ||||||||||||||| |||| ||||    
T  44523676 atattaacctcactctccattttagtaatattatcgctcctcacacacacttatg 44523622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 294 - 436
Target Start/End: Complemental strand, 12470325 - 12470183
Alignment:
Q  294 ttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgat 393  Q
    |||||||||||||| |||||| |||||||||||  || ||||||||||| ||||||||||| ||||||||||||||||||||||||  |||  ||| |||    
T  12470325 ttcggttaaaaatcaaaccgagccaacctaaaccaatctagtttggttccgttcttagtttctaattttgagatccaaagaaccgatgaactaaattgat 12470226  T
Q  394 gctagcctcactccccattttagtaattttatcgctcctcaca 436  Q
    ||||  |||| |||||||||||||||| ||||| ||| |||||    
T  12470225 gctaatctcagtccccattttagtaatattatccctcttcaca 12470183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 426
Target Start/End: Complemental strand, 25545387 - 25545177
Alignment:
Q  216 tgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaa 315  Q
    |||||||||||| ||||||| |||| |||||||||| |||||  || | ||||  | ||||||| |||| ||  | ||||||||| |||| |||||  ||    
T  25545387 tgtaagtggttcagacaaaatcgataaaatcgaaaattcaaaccgagcaaaactaaaaaagtattcgaccttgattggttcggttcaaaaccgaactaaa 25545288  T
Q  316 ccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatttta 415  Q
    ||||||||||| ||| |||||||||| |||||| |  |||||||||| | |||||||||||| |  || |||| | |||||| |||||||||||||||||    
T  25545287 ccaacctaaaccgatctagtttggtttggttctcaacttttaattttaaaatccaaagaaccaatgaatcgaaccaatgctaacctcactccccatttta 25545188  T
Q  416 gtaattttatc 426  Q
    ||||| |||||    
T  25545187 gtaatattatc 25545177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 261 - 426
Target Start/End: Original strand, 31136196 - 31136356
Alignment:
Q  261 aaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaatt 360  Q
    ||||||||||| |||||||||||| || || | ||||||| ||     ||||||||||||||||||  ||||| ||||||| ||||||| ||||  ||||    
T  31136196 aaccaaaccgaaaaagtatccgaccttgtttgattcggttcaa-----aaccgaaccaacctaaaccaatataatttggtttggttcttggtttcaaatt 31136290  T
Q  361 ttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatc 426  Q
    | |||||||||||||||||  ||||||| ||||||||  |||||||  |||| ||||||| |||||    
T  31136291 tcgagatccaaagaaccgatgaaccgaaccgatgctaaactcactcatcattatagtaatattatc 31136356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 377
Target Start/End: Complemental strand, 3997130 - 3996962
Alignment:
Q  208 attagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatc 307  Q
    ||||||| |||||||||||||||||||||| |||||| |||||   ||||  | ||||||||||  ||| |||||||||| || |||| |||| |||| |    
T  3997130 attaggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaacc 3997031  T
Q  308 gaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaacc 377  Q
    ||||| |||||| ||||||  |  | |||||||||||||| | | |||| |||||||||||||| |||||    
T  3997030 gaacctaaccaatctaaaccaaccttgtttggttcggttc-tcggttttcattttgagatccaaggaacc 3996962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 12013113 - 12013027
Alignment:
Q  214 gatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggtt 300  Q
    ||||||||||||| | | |||||||||||||||||||| | |||| ||||| |||||| |||||||||||| ||||| |||||||||    
T  12013113 gatgtaagtggtttgaataaaaccgatgaaatcgaaaatttaaattgaaccgaaccgaaaaagtatccgaccttatttggttcggtt 12013027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 21378657 - 21378567
Alignment:
Q  302 aaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgat 393  Q
    |||| ||||||||| ||||| ||| |||  ||||||||||||||||| ||||||| |||||||||| |||||||||||  ||||||||||||    
T  21378657 aaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgagattcaaagaaccgatgaaccgaatcgat 21378567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 369
Target Start/End: Complemental strand, 7352556 - 7352396
Alignment:
Q  209 ttagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcg 308  Q
    |||||| ||||| |||||| ||||||||| | |||| |||||   |||||  |||| |||||| ||| |||||||||||||| |||| ||||  ||| ||    
T  7352556 ttaggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccg 7352457  T
Q  309 aaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatcc 369  Q
    | ||||||||| | |||| | | |||||||||| ||||| | |||||| |||| |||||||    
T  7352456 atccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatcc 7352396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 379
Target Start/End: Complemental strand, 27227091 - 27226920
Alignment:
Q  208 attagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatc 307  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||   ||||  ||| |||||  | || |||||| |  || |  |||| || | |||  |    
T  27227091 attaggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaacaaacttaaaaggtatcccatcttgtctggtttggatcaaagcc 27226992  T
Q  308 gaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccga 379  Q
    |||||||||||| |||||| ||  | |||||||||||||||| |||||||||||| ||||| || |||||||    
T  27226991 gaaccgaaccaatctaaaccgaccttgtttggttcggttcttggtttttaattttaagatctaaggaaccga 27226920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 436
Target Start/End: Complemental strand, 35738195 - 35738093
Alignment:
Q  334 gtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcctc 433  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||  |||| ||  |||  || || |||||||||||||| |||| ||||| ||| ||    
T  35738195 gtttggttcggttctcagtttttcattttgagatccaaggaaccgatcaaccaaactgattgtaaccccactccccattttactaatattatccctcatc 35738096  T
Q  434 aca 436  Q
    |||    
T  35738095 aca 35738093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 371
Target Start/End: Complemental strand, 46265439 - 46265328
Alignment:
Q  260 gaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaat 359  Q
    |||||||||| | || ||||||||| || |  ||||||||| |||| ||||||||| ||| |||||| ||| | |||||||| |||| | ||||| | ||    
T  46265439 gaaccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcat 46265340  T
Q  360 tttgagatccaa 371  Q
    ||||||||||||    
T  46265339 tttgagatccaa 46265328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 22332100 - 22331994
Alignment:
Q  273 aaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaa 372  Q
    ||||||||| || || || |||||||||  ||| | |||| |||| |||||||  ||| |||||| ||||| || |  ||||||||||||||||||||||    
T  22332100 aaagtatcccaccttttttggttcggtttgaaaccaaaccaaaccgacctaaatcgatctagttttgttcgattttcggtttttaattttgagatccaaa 22332001  T
Q  373 gaaccga 379  Q
    |||||||    
T  22332000 gaaccga 22331994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 2197732 - 2197640
Alignment:
Q  334 gtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatc 426  Q
    ||||| || ||||||  |||||| ||||||||||||||  ||||||  |||| || |||||||| | ||||||||||||||| |||| |||||    
T  2197732 gtttgattgggttctcggtttttcattttgagatccaagaaaccgatcaaccaaaccgatgctaacttcactccccattttactaatattatc 2197640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 432
Target Start/End: Complemental strand, 12013022 - 12012904
Alignment:
Q  317 caacctaaactgatatagtttggttcggttcttagttttt---aattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattt 413  Q
    ||||||||||  || ||| |||||||  |||| |||||||   |||||| | |||||||||||||| |||||||| || ||||| |||||| || |||||    
T  12013022 caacctaaaccaatctagattggttcacttctcagttttttttaattttaaaatccaaagaaccgataaaccgaaccggtgctaacctcacccctcattt 12012923  T
Q  414 tagtaattttatcgctcct 432  Q
    ||||||  ||||| |||||    
T  12012922 tagtaagattatccctcct 12012904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 2923035 - 2923114
Alignment:
Q  292 ggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaa 371  Q
    ||||||||| |||| ||||||||||||| ||| || ||  | ||||| ||||||||||  ||||| ||||||||||||||    
T  2923035 ggttcggttcaaaaccgaaccgaaccaatctacaccgaccttgtttgattcggttcttgatttttcattttgagatccaa 2923114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 45595452 - 45595546
Alignment:
Q  331 atagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttat 425  Q
    ||||||||||| ||||||    || |||||||||||| |||| | |||| ||| ||||  ||||||| | |||||||||||||||||||| ||||    
T  45595452 atagtttggtttggttctcgaattctaattttgagattcaaatatccgataaatcgaactgatgctaacatcactccccattttagtaatattat 45595546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 361
Target Start/End: Original strand, 39695149 - 39695233
Alignment:
Q  277 tatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattt 361  Q
    |||||||| || || |||||||||  ||| ||| | ||||||| | ||||||||||||||||||| ||||| | |||||| ||||    
T  39695149 tatccgaccttgtttggttcggtttgaaaccgatctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcattt 39695233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 225 - 426
Target Start/End: Complemental strand, 1498365 - 1498164
Alignment:
Q  225 ttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaa 324  Q
    |||||||||||||||||||| ||||||  ||||  ||| ||||| |||||| |||||||| || || ||||||||| |||| ||||| ||||||||||||    
T  1498365 ttcggacaaaaccgatgaaaccgaaaatccaaaccgaatcaaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaa 1498266  T
Q  325 actgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaatttta 424  Q
    || ||| |||||  ||| |||||| ||| ||| ||||||||||||||  ||||||  ||||||| |||||||| | | |||||||||||||||||| |||    
T  1498265 accgatgtagttaagtttggttctcagtattttattttgagatccaataaaccgatgaaccgaaccgatgctaacatgactccccattttagtaatatta 1498166  T
Q  425 tc 426  Q
    ||    
T  1498165 tc 1498164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 238 - 436
Target Start/End: Complemental strand, 7239442 - 7239239
Alignment:
Q  238 gatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggtta-----aaaatcgaaccgaaccaacctaaactgatat 332  Q
    ||||||| | |||| |||||  ||||||||| || |||||||||||| |||||||||| ||||      |||| |||||||||||||| ||||  ||  |    
T  7239442 gatgaaaccaaaaattcaaaacgaaccaaactgaaaaagtatccgaccttattaggtttggtttggttcaaaaccgaaccgaaccaacttaaatcgagtt 7239343  T
Q  333 agtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcct 432  Q
    |||||||||||||||||||||||| ||||| |||||| |||| |||| ||| |||| |||||||| ||||||| |||||||||||||| ||||| |||||    
T  7239342 agtttggttcggttcttagttttttattttaagatcccaagatccgataaatcgaaccgatgctaacctcacttcccattttagtaatattatctctcct 7239243  T
Q  433 caca 436  Q
    ||||    
T  7239242 caca 7239239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 238 - 436
Target Start/End: Complemental strand, 7244618 - 7244415
Alignment:
Q  238 gatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggtta-----aaaatcgaaccgaaccaacctaaactgatat 332  Q
    ||||||| | |||| |||||  ||||||||| || |||||||||||| |||||||||| ||||      |||| |||||||||||||| ||||  ||  |    
T  7244618 gatgaaaccaaaaattcaaaacgaaccaaactgaaaaagtatccgaccttattaggtttggtttggttcaaaaccgaaccgaaccaacttaaatcgagtt 7244519  T
Q  333 agtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatcgctcct 432  Q
    |||||||||||||||||||||||| ||||| |||||| |||| |||| ||| |||| |||||||| ||||||| |||||||||||||| ||||| |||||    
T  7244518 agtttggttcggttcttagttttttattttaagatcccaagatccgataaatcgaaccgatgctaacctcacttcccattttagtaatattatctctcct 7244419  T
Q  433 caca 436  Q
    ||||    
T  7244418 caca 7244415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 214 - 396
Target Start/End: Original strand, 29126087 - 29126269
Alignment:
Q  214 gatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaaccg 313  Q
    |||||||||||||||||||||||| | ||||| || || | |||  |||||||||||| ||||||||||| ||| || || || |||  ||| |||||      
T  29126087 gatgtaagtggttcggacaaaaccaacgaaatggagaatttaaaccgaaccaaaccgaaaaagtatccgattttgtttgggtcagtttgaaaccgaacta 29126186  T
Q  314 aaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgct 396  Q
    ||||||||||||| | | |||||| ||| |||||| | ||||| ||||||| ||||||| |||| |  ||||||| |||||||    
T  29126187 aaccaacctaaaccggtctagtttagtttggttctcaattttttattttgatatccaaaaaaccaatgaaccgaaccgatgct 29126269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 347
Target Start/End: Original strand, 31895891 - 31896033
Alignment:
Q  205 ataattagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaa 304  Q
    |||||||||| |||||||||||||||||||||| |  |||||||||   ||||  |||||||||||| ||| |||||||| || || |||||||||  ||    
T  31895891 ataattaggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaa 31895990  T
Q  305 atcgaaccgaaccaacctaaactgatatagtttggttcggttc 347  Q
    | ||| | ||||||| | |||| ||| |||||||||| |||||    
T  31895991 accgatctgaaccaatccaaaccgatctagtttggtttggttc 31896033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 369
Target Start/End: Complemental strand, 16746726 - 16746567
Alignment:
Q  210 tagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcga 309  Q
    |||||||||||||||||||||||||||| | |||| |||||    |||  |||||||| ||| ||| ||||| || || || |||||||||  ||| |||    
T  16746726 tagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16746627  T
Q  310 accgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatcc 369  Q
     || |||||| | |||| ||| |||||||||| | ||| | |||||| |||| |||||||    
T  16746626 tccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatcc 16746567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 420
Target Start/End: Original strand, 17770213 - 17770421
Alignment:
Q  211 agggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactttattaggttcggttaaaaatcgaa 310  Q
    |||| |||||| ||||| |||||||| ||||||| | ||||  ||||   ||| ||||||  ||||||||| |  || || |||| |||| |||   |||    
T  17770213 aggggtgtaagcggttcagacaaaactgatgaaaccaaaaatccaaaccaaactaaaccgcaaaagtatccaatcttttttggtttggttcaaagctgaa 17770312  T
Q  311 ccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactcccca 410  Q
    |||||||||||||||| ||  ||||| | ||  |||||| |||||||| ||||||||||||||||  ||  |||| || |||||||| || |||| ||||    
T  17770313 ccgaaccaacctaaaccgaactagttggatttagttcttggtttttaaatttgagatccaaagaatagatgaaccaaaccgatgctaacc-cacttccca 17770411  T
Q  411 ttttagtaat 420  Q
    ||||| ||||    
T  17770412 ttttactaat 17770421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 39786072 - 39786164
Alignment:
Q  334 gtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccattttagtaattttatc 426  Q
    ||||||||||||||| || |||| | |||||||||||| || ||||||||| ||| |||||||| ||  | || |||||||| |||| |||||    
T  39786072 gtttggttcggttctcagattttcaatttgagatccaaggatccgacaaactgaaccgatgctaacccgaatctccattttactaatattatc 39786164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 388
Target Start/End: Complemental strand, 41092105 - 41092009
Alignment:
Q  292 ggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaa 388  Q
    ||||||| | ||||||||||| |||||| |||||| || |  ||||||||| |||||| |||||| | |||||||||||| ||| |||  |||||||    
T  41092105 ggttcggatcaaaatcgaaccaaaccaatctaaaccgacactgtttggttcagttcttggttttttactttgagatccaaggaatcgatgaaccgaa 41092009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 13828 - 13951
Alignment:
Q  292 ggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcg 391  Q
    ||||| ||| |||||||||||||||||| |||||||||| |  ||||||| |||| |  |||||| ||||||||||||||  ||||||  || |||| ||    
T  13828 ggttcagttcaaaatcgaaccgaaccaatctaaactgatcttatttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaaccg 13927  T
Q  392 atgctagcctcactccccatttta 415  Q
    |||||| |||||||||||||||||    
T  13928 atgctaacctcactccccatttta 13951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 33724 - 33799
Alignment:
Q  205 ataattagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatc 280  Q
    |||||||||| ||||||||||||||| |||||| ||||||  ||||   ||||| |||||||||||| || |||||    
T  33724 ataattaggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgtatc 33799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 209 - 367
Target Start/End: Original strand, 6310 - 6472
Alignment:
Q  209 ttagggatgtaagtggttcggacaaaaccgatgaaatcgaaaactcaaatggaaccaaaccgagaaagtatccgactt---ta-ttaggttcggttaaaa 304  Q
    |||||| | |||||| |||||||||||||||| |||| |||||  ||||  |||| ||||||| |||||||||||| |   || || ||||||||| |||    
T  6310 ttaggggtataagtgattcggacaaaaccgataaaattgaaaatccaaactgaactaaaccgaaaaagtatccgacctagctagtttggttcggtttaaa 6409  T
Q  305 atcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagat 367  Q
    || ||| ||||||||||||||| ||| ||||||| |  ||||||  |||||||||||||||||    
T  6410 attgaatcgaaccaacctaaaccgatctagtttgatctggttctcggtttttaattttgagat 6472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 441
Target Start/End: Original strand, 8270 - 8398
Alignment:
Q  313 gaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagatccaaagaaccgacaaaccgaatcgatgctagcctcactccccatt 412  Q
    |||||||||||||  ||| |||||||||||||||||   ||||  ||||| ||||||||||| ||||  |||||||  | ||||| ||||||||| ||||    
T  8270 gaaccaacctaaatcgatctagtttggttcggttctcgattttgtatttttagatccaaagagccgatgaaccgaactggtgctaacctcactccgcatt 8369  T
Q  413 ttagtaattttatcgctcctcacaaacac 441  Q
    || ||||| ||||| ||||||||| ||||    
T  8370 ttggtaatattatccctcctcacacacac 8398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 367
Target Start/End: Complemental strand, 1963 - 1873
Alignment:
Q  277 tatccgactttattaggttcggttaaaaatcgaaccgaaccaacctaaactgatatagtttggttcggttcttagtttttaattttgagat 367  Q
    |||||||| || || |||||||||  ||||||| | ||||||| | |||||||| || ||||||| ||||| | ||||||||||| |||||    
T  1963 tatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagat 1873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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