View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_high_16 (Length: 442)
Name: NF17188_high_16
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 39 - 428
Target Start/End: Complemental strand, 47271017 - 47270629
Alignment:
| Q |
39 |
acaaaatgatt-gaatatataaataaatgaacttattctcactttttaatatatgctttgaagcattgaagaaatcctagaacgatatataaatcttcca |
137 |
Q |
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| T |
47271017 |
acaaaatgatttgaatgtataaataaatgaacttattctcactttttaatatatgctttgaagcattgaagaaatcctagaacgatatataaatcttcca |
47270918 |
T |
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| Q |
138 |
gacagtgaacgtggaaggtaagtgattccctggatttggatttgttgcgacaatttcatacattcacacggccagcacatcgttggctgtttgatcgaga |
237 |
Q |
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| T |
47270917 |
gacagtgaacgtggaaggtaagtgattccctggatttggatttgttgcgacaatttcacacattcacacggccagcacatcgttggctgtttgatcgaga |
47270818 |
T |
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| Q |
238 |
tcaaacggtttaaatttcattcaatgcgcaatttaacgccgatcttgatccaacaatcaccgacgtgttgactgcgtgaattgttgactgcaacacaaat |
337 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47270817 |
tcaaacagtttaaatttcattcaatgcgcaatttaacgccgatcttgatccaacaaccaccgacgtgttgactgcgtgaattgttgactgca--acaaat |
47270720 |
T |
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| Q |
338 |
ccaaatccaaattcgtaattccatatgttcttataccagtacatcatactgatacttattttatcctaatgttggtggtacctttgatttg |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47270719 |
ccaaatccaaattcgtaattccatatgttcttataccagtacatcatactgatacttattttatcctaatgttggtggtacctttgatttg |
47270629 |
T |
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