View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_high_2 (Length: 766)
Name: NF17188_high_2
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 361 - 567
Target Start/End: Complemental strand, 34273806 - 34273600
Alignment:
| Q |
361 |
atcgaatgtatttgtagttgaatagattggaagatagtggataattgaatgcgatatttattaatttttggagtaagtagctagcttactaatagtaatt |
460 |
Q |
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| T |
34273806 |
atcgaatgtatttgtagttgaatagattggaagatagtggataattgaatgcgatatttattaatttttggagtaagtagctatcttactaatagtaatt |
34273707 |
T |
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| Q |
461 |
gcatttgggtgggagttttccatcatgcatatcctctccagcccaagaaactctgcaacctccgccaactcaaggccccaacttttccataatgagttaa |
560 |
Q |
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| T |
34273706 |
gcatttgggtgggagttttccatcatgcatatcctctccagcccaagaaactctgcaacctccgccaactcaaggccccaacttttccataatgagttaa |
34273607 |
T |
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| Q |
561 |
taaaaag |
567 |
Q |
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| T |
34273606 |
taaaaag |
34273600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 34274120 - 34273821
Alignment:
| Q |
16 |
cattaatgttataaacaagaagagctttgctcgtaaattgacacttaaaattaatatcagaaaggatttcgatactttggaccggaacttctttcttgat |
115 |
Q |
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| T |
34274120 |
cattaatgttataaacaaaaagagattttctagtaatttgactcttaaaattaatttcagaaaggattttaataatttggaccggaacttctttcttcat |
34274021 |
T |
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| Q |
116 |
gtgcttgcttgctttacttttggccccattttctgtaacttgattaaggaaatcttacactaa----gnnnnnnnacacacannnnnnncttcttttatt |
211 |
Q |
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| T |
34274020 |
gtgcttgctcgctttacttttggccccattttctgtaacttgattaaggaaatcttacactaaacccacacacacacacacatttttttcttcttttatt |
34273921 |
T |
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| Q |
212 |
taaatatatgaacacttgacagaggattagagaatactaagaggtgtcaacctt-ttagagaatactattctgtttgatgtcattatgattttggcttcg |
310 |
Q |
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| T |
34273920 |
taaatatatgaacacttgacagaggattagagaatactaagaggtgtcaaccttgttagagaatactattctgtttgatgtcattatgattttggcttcg |
34273821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 627 - 737
Target Start/End: Complemental strand, 34273541 - 34273431
Alignment:
| Q |
627 |
cattaagtgatataagttgatttattataaattcaacaactccatatgcattagggattacttaggtttttattacttgttgcgcttacttataacataa |
726 |
Q |
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| T |
34273541 |
cattaagtgatataagttgatttattataaattcaacaactccatatgcattagggattacttaggtttttattacttgttgcgcttacttataacataa |
34273442 |
T |
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| Q |
727 |
aatcatcaaca |
737 |
Q |
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| T |
34273441 |
aatcatcaaca |
34273431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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