View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17188_high_21 (Length: 389)
Name: NF17188_high_21
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 40122236 - 40121984
Alignment:
| Q |
13 |
attctcaagacattcatcaacttatttaacgggacaccacaacttatcgatgtggatcaa--acaactaaacacattttcacaaacaaccaaatttccta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40122236 |
attctcaagacattcatcaacttatttaacgggacaccacaacttatcgatgtgtatcaacaacaactaaacacattttcataaacaaccaaatttccta |
40122137 |
T |
|
| Q |
111 |
tctaccatctcttcagtacaattggatatataagacatattattcaatgtcaaaatgaaccaagtatcatagctactggatacaagtttaagataacagc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
40122136 |
tctaccatctcttcagtacaattggata----agacatattattcaatgtcaaaatgaaccaagtatcatagctgctggatataagtttaagataacagc |
40122041 |
T |
|
| Q |
211 |
aatctgcaatatcagttaatgaatgtatagtctttttggcatttggtgaactcaaaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40122040 |
aatctgcaatatcagttaatgaatgtatagtctttttggcatttggtgaactcaaaa |
40121984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 40093386 - 40093333
Alignment:
| Q |
236 |
tatagtctttttggcatttggtgaactcaaaagaaatgttaaattaaatttgaa |
289 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||| ||| ||||||||||||||||| |
|
|
| T |
40093386 |
tatagtctttatggcatttgatgaaatcaaaataaaagttaaattaaatttgaa |
40093333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University