View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17188_high_23 (Length: 360)
Name: NF17188_high_23
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 44099069 - 44098729
Alignment:
| Q |
11 |
taatacttgttctataagtaatgcattaggaaaatagtcaaatgcagttagagaagaggggtttaaatcttcttggttcttacatatataattttcaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44099069 |
taatacttgttctataagtaatgcattaggaaaatagtcaaatgcagttagagaagaggggtttaaatcttcttggttcttacatatataattttcaatt |
44098970 |
T |
|
| Q |
111 |
atatacatgtatttgcgcccatnnnnnnnntgggatcatgtaggattggacacttaaaacaatttcagggctcctctcnnnnnnnttaaatattagggct |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44098969 |
atatacatgtatttgcgcccat-aaaaaaatgggatcatgtaggattggacacttaaaacaatttcagggctcctctcaaaaaaa-taaatattagggct |
44098872 |
T |
|
| Q |
211 |
cttgcaagcgacatatatagtacgttttttaca---aagccagataaccagtgtagcttaatagtttacannnnnnngcactgtttcaagtctat----g |
303 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
44098871 |
cttgcaagcgacagatattgtacgttttttacaatcaagccagataaccagtgtagcttaatagtttacatttttttgcactgtttcaagtctatgtacg |
44098772 |
T |
|
| Q |
304 |
tagtaatctatctttgtttgtttatcaatgaaatagtgtttgt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
44098771 |
tagtaatctatctttgtttgtttatcaatgaaattgtttttgt |
44098729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University