View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_high_24 (Length: 348)
Name: NF17188_high_24
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 3425160 - 3424832
Alignment:
| Q |
18 |
agcacatggtttcaatatattcattttggctttaaacaaaaatggattgacattttttcatatnnnnnnnnnnnnnnnntctcgactttaggtatctcag |
117 |
Q |
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| T |
3425160 |
agcacatggtttcaatatattcattttggctttaaacaaaaatggattgacattttttcatataaaacaaaaaataaaatctcgactttaggtatctcag |
3425061 |
T |
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| Q |
118 |
tcaatgtcaatattttaatccacacatgcacatatacatattacatgattattaacaagaatcattgtggaagaagatcaatgcatagctatggttgatg |
217 |
Q |
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| T |
3425060 |
cacttgtcaatattttaatccacacatgcacatatacatattacatgattattaacaagaatcattgtggaagaagatcaatgaatagctatggttgatt |
3424961 |
T |
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| Q |
218 |
agggtcactttcaatttccttagccaattctcttgtgagtttgtcagcacgatcatcatgtccaccagcaaatgtataaactctaaatgcaaattggaaa |
317 |
Q |
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| T |
3424960 |
agggtcactttcaatttccttagccaattctcttgtgagtttgtcagcacgatcatcatgtccaccagcaaatgtataaactctaaatgcaaattggaaa |
3424861 |
T |
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| Q |
318 |
gccctccaaagcaacttaccaccacattc |
346 |
Q |
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| T |
3424860 |
gccctccaaagcaacttaccaccacattc |
3424832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 178 - 346
Target Start/End: Original strand, 11916422 - 11916589
Alignment:
| Q |
178 |
atcattgtggaagaagatcaatgcatagctatggttgatgagggtcactttcaatttccttagccaattctcttgtgagtttgtcagcacgatcatcatg |
277 |
Q |
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| T |
11916422 |
atcattgtagaa-aagatcaaaacatagccatggttgattagggtcactttcaatttccttagccaattctcttatgagtttgtcagcacgatcatcatg |
11916520 |
T |
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| Q |
278 |
tccaccagcaaatgtataaactctaaatgcaaattggaaagccctccaaagcaacttaccaccacattc |
346 |
Q |
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| T |
11916521 |
tccaccagcaaatgtataaaccctaaatgcaaattggaaagccctccaaagcaacttaccaccacattc |
11916589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 35742140 - 35742232
Alignment:
| Q |
238 |
tagccaattctcttgtgagtttgtcagcacgatcatcatgtccaccagcaaatgtataaactctaaatgcaaattggaaagccctccaaagca |
330 |
Q |
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| T |
35742140 |
tagccaattctcttgttaacgtgtcggcacgatcgtcaagtccaccagcaaatgtgtagacacgaaatgtaaattggaacgccctccatagca |
35742232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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