View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17188_high_27 (Length: 323)
Name: NF17188_high_27
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 24116349 - 24116655
Alignment:
| Q |
1 |
tttcgatagacaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24116349 |
tttcgatagacaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaa |
24116448 |
T |
|
| Q |
101 |
atttcttaaaaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24116449 |
atttcttaaaaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgt |
24116548 |
T |
|
| Q |
201 |
gcatatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24116549 |
gcatatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcac |
24116648 |
T |
|
| Q |
301 |
acaatag |
307 |
Q |
| |
|
||||||| |
|
|
| T |
24116649 |
acaatag |
24116655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 24108639 - 24108948
Alignment:
| Q |
1 |
tttcgatagacaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgat---ataaacttg |
97 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24108639 |
tttcgacagacaatgaaatgtcacatattgatacgaatttcttaaacttcgagaaattcttgagcaatacatgaaaccctagattgatgatataaacttg |
24108738 |
T |
|
| Q |
98 |
aaaatttcttaaaaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccc |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||| | ||||||||| | || || ||||| |||||||| |
|
|
| T |
24108739 |
aaaatttcttaaaaacttccatgtatccatctctacaaatttgaatgcacgaatccatcataacactggcacaagacaataacttgtcctcagagtaccc |
24108838 |
T |
|
| Q |
198 |
tgtgcatatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcg |
297 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
24108839 |
tgtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcg |
24108938 |
T |
|
| Q |
298 |
cacacaatag |
307 |
Q |
| |
|
|||||||||| |
|
|
| T |
24108939 |
cacacaatag |
24108948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 23690103 - 23689822
Alignment:
| Q |
24 |
catattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaaaaacttccatgtgt |
123 |
Q |
| |
|
|||||||| |||||||||||||| ||| | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
23690103 |
catattgacacaaatttcttaaactttcaaaaattcttgagcaacacatgaaaccctacattgatataaacttgaaaatttcttaaagacttccatgatt |
23690004 |
T |
|
| Q |
124 |
ccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgtgcatatcttcaaatcattgctcc |
223 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
23690003 |
ccctctccacaaatttgaatgcacgatttcatcataacgtgtgcacaagacaacaagttttcctcagagtaccctgtacacatcttcaaatcattgctcc |
23689904 |
T |
|
| Q |
224 |
aaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23689903 |
aaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcagacaat |
23689822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 24062340 - 24062059
Alignment:
| Q |
24 |
catattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaaaaacttccatgtgt |
123 |
Q |
| |
|
|||||||| |||||||||||||| ||| | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
24062340 |
catattgacacaaatttcttaaactttcaaaaattcttgagcaacacatgaaaccctacattgatataaacttgaaaatttcttaaagacttccatgatt |
24062241 |
T |
|
| Q |
124 |
ccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgtgcatatcttcaaatcattgctcc |
223 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
24062240 |
ccctctccacaaatttgaatgcacgatttcatcataacgtgtgcacaagacaacaagttttcctcagagtaccctgtacacatcttcaaatcattgctcc |
24062141 |
T |
|
| Q |
224 |
aaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24062140 |
aaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcagacaat |
24062059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 24615023 - 24614721
Alignment:
| Q |
1 |
tttcgatagacaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaa |
100 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615023 |
tttcgacagacaataaaatgttacatattaatacaaatttcttaaatc--gagatattcttgagcaatacatgaaaccctagattgatataaacttgaaa |
24614926 |
T |
|
| Q |
101 |
atttcttaaaaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||| || ||||||||| | || ||||||||||||||||| || |
|
|
| T |
24614925 |
atttcttaaaaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataacttttcctcggagtaccccgt |
24614826 |
T |
|
| Q |
201 |
gcatatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcac |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
24614825 |
acacatcttcaaatcattgctccaaaagggataccttccaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgcac |
24614726 |
T |
|
| Q |
301 |
acaat |
305 |
Q |
| |
|
||||| |
|
|
| T |
24614725 |
acaat |
24614721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 23693576 - 23693278
Alignment:
| Q |
9 |
gacaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttctta |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
23693576 |
gacaatgaaatgtaacatattgatacaaattttttaaacttccagaaattcttgagcaatacatgaaaccctacattgatataaacttgaaaatttcata |
23693477 |
T |
|
| Q |
109 |
aaaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgtgcatatct |
208 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | || || |||||||||||||| || || || | |
|
|
| T |
23693476 |
aaaacttccatgattccctctccacaaatttgaatgcacgattccatcataacatgggcacaagacaataacttatcctcggagtaccccgtacacattt |
23693377 |
T |
|
| Q |
209 |
tcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23693376 |
tcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatag |
23693278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 23712016 - 23711718
Alignment:
| Q |
9 |
gacaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttctta |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
23712016 |
gacaatgaaatgtaacatattgatacaaattttttaaacttccagaaattcttgagcaatacatgaaaccctacattgatataaacttgaaaatttcata |
23711917 |
T |
|
| Q |
109 |
aaaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgtgcatatct |
208 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | || || |||||||||||||| || || || | |
|
|
| T |
23711916 |
aaaacttccatgattccctctccacaaatttgaatgcacgattccatcataacatgggcacaagacaataacttatcctcggagtaccccgtacacattt |
23711817 |
T |
|
| Q |
209 |
tcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23711816 |
tcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatag |
23711718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 23730472 - 23730174
Alignment:
| Q |
9 |
gacaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttctta |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
23730472 |
gacaatgaaatgtaacatattgatacaaattttttaaacttccagaaattcttgagcaatacatgaaaccctacattgatataaacttgaaaatttcata |
23730373 |
T |
|
| Q |
109 |
aaaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgtgcatatct |
208 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | || || |||||||||||||| || || || | |
|
|
| T |
23730372 |
aaaacttccatgattccctctccacaaatttgaatgcacgattccatcataacatgggcacaagacaataacttatcctcggagtaccccgtacacattt |
23730273 |
T |
|
| Q |
209 |
tcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23730272 |
tcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatag |
23730174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 23748927 - 23748629
Alignment:
| Q |
9 |
gacaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttctta |
108 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
23748927 |
gacaatgaaatgtaacatattgatacaaattttttaaacttccagaaattcttgagcaatacatgaaaccctacattgatataaacttgaaaatttcata |
23748828 |
T |
|
| Q |
109 |
aaaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctcggagtaccctgtgcatatct |
208 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | || || |||||||||||||| || || || | |
|
|
| T |
23748827 |
aaaacttccatgattccctctccacaaatttgaatgcacgattccatcataacatgggcacaagacaataacttatcctcggagtaccccgtacacattt |
23748728 |
T |
|
| Q |
209 |
tcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23748727 |
tcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatag |
23748629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 11390931 - 11390828
Alignment:
| Q |
202 |
catatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcaca |
301 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||| ||| ||||| |||||||||||||| | | |||||||||||| ||||| || ||||| |||| |
|
|
| T |
11390931 |
catatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacaca |
11390832 |
T |
|
| Q |
302 |
caat |
305 |
Q |
| |
|
|||| |
|
|
| T |
11390831 |
caat |
11390828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 11419693 - 11419796
Alignment:
| Q |
202 |
catatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcaca |
301 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||| ||| ||||| |||||||||||||| | | |||||||||||| ||||| || ||||| |||| |
|
|
| T |
11419693 |
catatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacaca |
11419792 |
T |
|
| Q |
302 |
caat |
305 |
Q |
| |
|
|||| |
|
|
| T |
11419793 |
caat |
11419796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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