View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_high_29 (Length: 308)
Name: NF17188_high_29
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 24137211 - 24137424
Alignment:
| Q |
1 |
cccaacatgttccttttacatacctacccatcaaacaattccacgaaatcaattcccaatccaccttcgactcaaacaatcgacgagcctcctcaagtct |
100 |
Q |
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| T |
24137211 |
cccaacatcttcctcttacatacctacccatcaaacaattccacggaatcaattcccaaaccaccttcgactcaaacaatcgacgagcctcctcaagtct |
24137310 |
T |
|
| Q |
101 |
cccattctgaacatacactgcaagcaatccattccaagagatggaatccttataaagcatgttatcaaaaactagtttagcctcgtcaacgcaacctctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24137311 |
cccattctgaacatacactgcaagcaatccattccaagagatggaatccttataaagcatgttatcaaaaactagtttagcctcgtcaacgcaacctctc |
24137410 |
T |
|
| Q |
201 |
tgaacataaccaga |
214 |
Q |
| |
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| |||||||||||| |
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| T |
24137411 |
taaacataaccaga |
24137424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 24134918 - 24135077
Alignment:
| Q |
18 |
acatacctacccatcaaacaattccacgaaatcaattcccaatccaccttcgactcaaacaatcgacgagcctcctcaagtctcccattctgaacataca |
117 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
24134918 |
acattcctacccatcaaacaattccacaaaatcaattcccaatccaccttcga-------------cgagcctcctcaagtctcccattttgaacataca |
24135004 |
T |
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| Q |
118 |
ctgcaagcaatccattccaagagatgg-aatccttataaagcatgttatcaaaaactagtttagcctcgtcaa |
189 |
Q |
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| T |
24135005 |
ctacaagcaatccattccaaaagatggaaatacttataaggcatgttatcaaaaactagtttagcctcatcaa |
24135077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 24137447 - 24137528
Alignment:
| Q |
212 |
agatccttttgaggcattaaatcaaacaagttgtgggcatcgatgagtctgcggtttttgacgtagccaatgagcattaagt |
293 |
Q |
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| T |
24137447 |
agatccttttgaggcattaaatcaaacaagttgtgggcatcgatgagtctgcggtttttgacgtagccaatgagcattaagt |
24137528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45148689 - 45148475
Alignment:
| Q |
1 |
cccaacatgttcctttt-acatacctacccatcaaacaattccacgaaatcaattcccaatccaccttcgactcaaacaatcgacgagcctcctcaagtc |
99 |
Q |
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|||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45148689 |
cccaacatcttcctcttcacatacccacccatcaaacaattccacgaaatcaattcccaatccaccttcgactcaaacaatcgacgagcctcttcaagtc |
45148590 |
T |
|
| Q |
100 |
tcccattctgaacatacactgcaagcaatccattccaagagatggaatccttataaagcatgttatcaaaaactagtttagcctcgtcaacgcaacctct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || |
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| T |
45148589 |
tcccattctgaacatacactgcaagcaatccattccaagagatggaatccttataaggcatgttatcaaaaactagtttagcctcatcaacgcaaccact |
45148490 |
T |
|
| Q |
200 |
ctgaacataaccaga |
214 |
Q |
| |
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| ||||||||||||| |
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| T |
45148489 |
ccgaacataaccaga |
45148475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 45148450 - 45148371
Alignment:
| Q |
214 |
atccttttgaggcattaaatcaaacaagttgtgggcatcgatgagtctgcggtttttgacgtagccaatgagcattaagt |
293 |
Q |
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||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||| |||||| |||||||||||| |
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| T |
45148450 |
atccttttgaggcattaaatcaaacaagttgcgggcatcaacgagtctgcgatttttgacatagccagtgagcattaagt |
45148371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 45165034 - 45164878
Alignment:
| Q |
16 |
ttacatacctacccatcaaacaattccacgaaatcaattcccaatccaccttcgactcaaacaatcgacgagcctcctcaagtctcccattctgaacata |
115 |
Q |
| |
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||||| ||| |||||||||||| ||||| |||||||| ||||||||| || ||||||||||| ||| |||||| |||| ||||||||| |||||||| |
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| T |
45165034 |
ttacaaacccacccatcaaacagttccatgaaatcaagtcccaatccgatttagactcaaacaagagacaagcctcttcaattctcccattgtgaacata |
45164935 |
T |
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| Q |
116 |
cactgcaagcaatccattccaagagatggaatccttataaagcatgttatcaaaaac |
172 |
Q |
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| T |
45164934 |
ggcggcaagaaggccattccaagagatggaattcttttcaggcatattatcaaaaac |
45164878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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