View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_high_45 (Length: 229)
Name: NF17188_high_45
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_45 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 35381728 - 35381505
Alignment:
| Q |
6 |
atcacctttgctccatttaactcagcttctataattgtctcttcaatcaagttgttccatgttagcttctgccctttcgaaaaatactacaaagaaggaa |
105 |
Q |
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| T |
35381728 |
atcacctttgctccatttaactcagcttctataattgtctcttcaatcaagttgttccatgttagcttctgcccttttgaaaaatactacaaagaaggaa |
35381629 |
T |
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| Q |
106 |
atcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagagagaaaaatacttgtgttt |
205 |
Q |
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| T |
35381628 |
atcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagagaaaaaaatacttgtgttt |
35381529 |
T |
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| Q |
206 |
tgaatcttggtaaaagccaacatt |
229 |
Q |
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| T |
35381528 |
tgaatcttggtaaaagccaacatt |
35381505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 170
Target Start/End: Complemental strand, 35355717 - 35355555
Alignment:
| Q |
6 |
atcacctttgctccatttaactcagcttctataattgtctcttcaatcaagttgttccatgttagcttctgccctttcgaaaaatactacaaagaaggaa |
105 |
Q |
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|||||||||||||||||||| ||||| || |||||||| |||||||||||||||||| |||||| ||||||||||| || |||||||||||| ||||| |
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| T |
35355717 |
atcacctttgctccatttaattcagcctccataattgtttcttcaatcaagttgttcaatgttatgttctgcccttttgagaaatactacaaaataggaa |
35355618 |
T |
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| Q |
106 |
atcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaa |
170 |
Q |
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| T |
35355617 |
accaa--agggatattacattggtaatcactaaatcattctccaaggagaaaacaaaatctgaaa |
35355555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 35371153 - 35371098
Alignment:
| Q |
6 |
atcacctttgctccatttaactcagcttctataattgtctcttcaatcaagttgtt |
61 |
Q |
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|||||||||||||||||||||||||| || | ||||| |||||||||||||||||| |
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| T |
35371153 |
atcacctttgctccatttaactcagcctccacaattgcctcttcaatcaagttgtt |
35371098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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