View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17188_high_9 (Length: 536)
Name: NF17188_high_9
Description: NF17188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17188_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 520
Target Start/End: Complemental strand, 50766920 - 50766416
Alignment:
| Q |
16 |
atgggattcaatcatctcggtaagaaacacatgctgctagtgcatgcatactaatcttatacttccannnnnnnnnnnnnnnnnagcaatctaaatattt |
115 |
Q |
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| T |
50766920 |
atgggattcaatcatctcggtaagaaacacatgctgctagtgcatgcatactaatcttatacttccattttatttttcatttttagcaatctaaatattt |
50766821 |
T |
|
| Q |
116 |
gaataatgaattcccttttgcaatgtctcaccatcgaatccatcgtgaacttgtgattcatgtgttagcatatacttcacaggatttggaatgtggcaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50766820 |
gaataatgaattcccttttgcaatgtctcaccatcgaatccatcgtgaacttgtgattcatgtgttagcatatacttcacaggatttggaatgtgacaat |
50766721 |
T |
|
| Q |
216 |
attggatatacatttgaatccttaggcaatgacagttacttttaggttttgctagtcataacaggaaagtaaagaacagattgtgttaggtgtgactcct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
50766720 |
attggatatacatttgaatccttaggcaatgacagttacttttaggttttgctagtcatagcaggaaagtaaagaacggattgtgttaggtgtgactcct |
50766621 |
T |
|
| Q |
316 |
aggttgctgataatcgtgtcatgtgtaaattggatggtagtatttaaacacaattgcccgaactctgatcaatttctaacaaatttaaatttgttcagat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766620 |
aggttgctgataatcgtgtcatgtgtaaattggatggtagtatttaaacacaattgcccgaactctgatcaatttctaacaaatttaaatttgttcagat |
50766521 |
T |
|
| Q |
416 |
atgtaaatggatattgctacggagctccttcaagccagatgtaatctgctataatttactcattgatgcttttggacaaaagtttctatacaaggaggca |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766520 |
atgtaaatggatattgctacggagctccttcaagccagatgtaatctgctataatttactcattgatgcttttggacaaaagtttctatacaaggaggca |
50766421 |
T |
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| Q |
516 |
gaatc |
520 |
Q |
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| T |
50766420 |
gaatc |
50766416 |
T |
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